View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4995_high_5 (Length: 406)
Name: NF4995_high_5
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4995_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 27939777 - 27939478
Alignment:
| Q |
23 |
ttcctttacccctttcaatgttgacaaaaacccactaagctaccttccatggagaatatcaaagtttcgatttttctctgattcggtataaactgaccaa |
122 |
Q |
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| T |
27939777 |
ttcctttacccctttcaatgttgacaaaaacccactaagctaccttctatggagaatatcaaagtttcgatttttctctgattcggtataaactgaccaa |
27939678 |
T |
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| Q |
123 |
atactgtgctgaagcaatgcgtagagagatcgcgtttctcgctcagcctcgattcctcattctcctccttgttctctcaattttcattattttcgcattc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939677 |
atactgtgctgaagcaatgcgtagagagatcgcgtttctcgctcagcctcgattcctcattctcctccttgttctctcaattttcattattttcgcattc |
27939578 |
T |
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| Q |
223 |
tcttcttctaaactggtatgctcctatgacccttttgtttatatattgctgtcattgtggatctgatctgggttattgataatatgaattaaaaatgtga |
322 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939577 |
tcttcttctaaactggtatgctcttatgacccttttgtctatatattgctgtcattgtggatctgatctgggttattgataatatgaattaaaaatgtga |
27939478 |
T |
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