View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4995_low_10 (Length: 289)

Name: NF4995_low_10
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4995_low_10
NF4995_low_10
[»] chr6 (48 HSPs)
chr6 (18-282)||(26803454-26803718)
chr6 (18-286)||(28787242-28787510)
chr6 (18-286)||(28793363-28793631)
chr6 (18-281)||(27603614-27603877)
chr6 (18-282)||(26824827-26825091)
chr6 (18-271)||(26647498-26647751)
chr6 (18-271)||(26753466-26753719)
chr6 (17-286)||(27717408-27717677)
chr6 (17-271)||(27337004-27337258)
chr6 (17-271)||(27397744-27397998)
chr6 (17-286)||(27610029-27610298)
chr6 (17-285)||(27679955-27680223)
chr6 (18-286)||(31285563-31285831)
chr6 (18-273)||(26624288-26624543)
chr6 (18-273)||(26730265-26730520)
chr6 (17-286)||(27426521-27426790)
chr6 (18-288)||(26885072-26885339)
chr6 (37-273)||(27591950-27592186)
chr6 (17-277)||(27697495-27697755)
chr6 (37-252)||(27676549-27676764)
chr6 (29-252)||(27705175-27705398)
chr6 (37-252)||(25492248-25492463)
chr6 (36-271)||(26656984-26657216)
chr6 (36-271)||(26762955-26763187)
chr6 (17-252)||(26862618-26862853)
chr6 (37-271)||(26143887-26144121)
chr6 (198-282)||(28782109-28782193)
chr6 (37-271)||(25484078-25484312)
chr6 (37-271)||(25539562-25539796)
chr6 (37-271)||(25580741-25580975)
chr6 (37-252)||(27530233-27530445)
chr6 (37-167)||(25512014-25512144)
chr6 (37-167)||(26057045-26057175)
chr6 (37-167)||(26077015-26077145)
chr6 (201-244)||(25074913-25074956)
chr6 (201-251)||(26950782-26950832)
chr6 (37-147)||(27215595-27215705)
chr6 (201-257)||(26938062-26938118)
chr6 (204-251)||(26975990-26976037)
chr6 (213-271)||(26056941-26056999)
chr6 (213-271)||(26076911-26076969)
chr6 (99-149)||(28186535-28186585)
chr6 (114-252)||(28235603-28235741)
chr6 (204-246)||(31289313-31289355)
chr6 (198-271)||(25511911-25511984)
chr6 (206-251)||(26849751-26849796)
chr6 (198-271)||(27215471-27215544)
chr6 (18-78)||(26849924-26849984)
[»] scaffold0419 (1 HSPs)
scaffold0419 (18-286)||(8491-8759)
[»] scaffold0277 (2 HSPs)
scaffold0277 (18-286)||(12585-12853)
scaffold0277 (18-282)||(3622-3886)
[»] chr8 (1 HSPs)
chr8 (18-285)||(29272748-29273015)
[»] chr1 (3 HSPs)
chr1 (36-252)||(28163304-28163520)
chr1 (18-271)||(28126585-28126838)
chr1 (17-274)||(267249-267506)
[»] scaffold0349 (1 HSPs)
scaffold0349 (17-286)||(2448-2717)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-286)||(60573-60842)
[»] chr4 (8 HSPs)
chr4 (17-286)||(18074765-18075034)
chr4 (37-280)||(18678485-18678728)
chr4 (37-274)||(18654402-18654639)
chr4 (37-285)||(18723010-18723258)
chr4 (37-280)||(18698325-18698568)
chr4 (37-280)||(18730429-18730672)
chr4 (204-285)||(5090046-5090127)
chr4 (37-142)||(18688551-18688656)
[»] chr5 (1 HSPs)
chr5 (99-252)||(16691905-16692058)
[»] chr2 (1 HSPs)
chr2 (201-251)||(17992308-17992358)
[»] scaffold1870 (1 HSPs)
scaffold1870 (18-58)||(1-41)
[»] scaffold0038 (1 HSPs)
scaffold0038 (114-252)||(35765-35903)
[»] scaffold0019 (1 HSPs)
scaffold0019 (99-149)||(57285-57335)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 48)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 26803718 - 26803454
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  26803718 gaacccactatctctaaaactaagggaagacctgaagcatatgaaactgcacgatttaaaatgtcttcataacttgaaggtactttgttatttttaaaag 26803619  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||||||||||| |||||||||| ||||||||||||| ||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||    
T  26803618 ccatccacctcaacaattcaagagcttctgtcccatacaacccctctactgcatatgttctttctatatcatgactggtcagtaaatgtttgtctcgagt 26803519  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgct 282  Q
    |||||||||||||||||||||| | |||||||||| ||||| ||| |||||||||||||||||||    
T  26803518 ggtaatgatgaccctgcttccatggccaaaccaatcaggtcctccagccaaagcatgtagttgct 26803454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 28787510 - 28787242
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28787510 gaacccactatttctaaaactaagggaaggcccgaagcataagaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 28787411  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    ||||||| |||||||| | |||||||||| ||||||||| |||||  |||  ||  || ||||||||  | |||||  | ||||| ||||||||||||||    
T  28787410 ccatccatctcaacaactcaagagcttctgtcccatacagccctttcacttcatgtgtactttctatcccatgacttcttagtaagtgtttgtctcgagt 28787311  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
     ||||||||||||||||||||||| || ||||||| ||||| ||| |||||||||||||||||||||||    
T  28787310 cgtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgcttcat 28787242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 28793631 - 28793363
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28793631 gaacccactatttctaaaactaagggaaggcccgaagcatacgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 28793532  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    ||||||| |||||||| | |||||||||| ||||||||| |||||  |||  ||  || ||||||||  | |||||  | ||||| ||||||||||||||    
T  28793531 ccatccatctcaacaactcaagagcttctgtcccatacagccctttcacttcatgtgtactttctatcccatgacttcttagtaagtgtttgtctcgagt 28793432  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
     ||||||||||||||||||||||| || ||||||| ||||| ||| |||||||||||||||||||||||    
T  28793431 cgtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgcttcat 28793363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 27603614 - 27603877
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| |||| ||| || ||||||||||| || |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  27603614 gaacccactacttccaaaactaagggaagtcctgaagcatatgaaactgcacggtttaaaacgtcttcataaactgaaggtactttgttattcttaaaag 27603713  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||||||||||| |||||||||| ||| | |||||||||||| |  |||| ||||||||||||| |||||||| ||||| ||| ||||||||||    
T  27603714 ccatccacctcaacaattcaagagcttctgtcctacacaacccttctaatgcatactttctttctatatcatgactggttagtaagtgtctgtctcgagt 27603813  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgc 281  Q
    |||||||||||||||||||||| | |||||||||| ||||  ||| |||||||| |||||||||    
T  27603814 ggtaatgatgaccctgcttccaagcccaaaccaatcaggttctcctgccaaagcctgtagttgc 27603877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 26825091 - 26824827
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||| |||||||    
T  26825091 gaacccactatttctaatactaagggaaggcccgaagcatatgaaactgcacggtttaaaatgtgttcataacttgacggtactttgttatttttaaaag 26824992  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||||||  |||| ||  |||||| || ||| |||| ||||| ||||||||||||||    
T  26824991 ccatccaccttaacaattcaagagcttctgtcccatacaacccttctacttcatacattaattctatctcatgattggtaagtaattgtttgtctcgagt 26824892  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgct 282  Q
     ||||||||||| ||||| |||  ||| ||||||| |  || ||| |||||||||| ||||||||    
T  26824891 tgtaatgatgactctgctgccattaccgaaccaatcaaatcctccagccaaagcatctagttgct 26824827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 26647751 - 26647498
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |    
T  26647751 gaacccactatttctaaaactaagggaaggcctgaagcatatgaaactgcacggtttaaaacgtcttcataacttggcggtactttgttattcttaaacg 26647652  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||||||||||| |||||||||| ||||||| | ||||  ||||  ||| |||||||||||  | |||| ||| ||||| ||||| ||||| ||    
T  26647651 ccatccacctcaacaattcaagagcttctgtcccatatagccctcttactgcatatgttctttctatcccatgacaggttagtaagtgtttatctcgggt 26647552  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||| |||||||| ||||||||| |||| ||||||| | ||| ||| ||||||||    
T  26647551 ggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagc 26647498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 26753719 - 26753466
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |    
T  26753719 gaacccactatttctaaaactaagggaaggcctgaagcatatgaaactgcacggtttaaaacgtcttcataacttggcggtactttgttattcttaaacg 26753620  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||||||||||| |||||||||| ||||||| | ||||  ||||  ||| |||||||||||  | |||| ||| ||||| ||||| ||||| ||    
T  26753619 ccatccacctcaacaattcaagagcttctgtcccatatagccctcttactgcatatgttctttctatcccatgacaggttagtaagtgtttatctcgggt 26753520  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||| |||||||| ||||||||| |||| ||||||| | ||| ||| ||||||||    
T  26753519 ggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagc 26753466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 27717408 - 27717677
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| ||||||||||  ||||| |||||||| |||||||||| ||||||||| |||||||  ||||| |||| |||||| || |||| | | ||||||    
T  27717408 agaacccactatttctataactaacggaaggccagaagcatatgcaactgcacggtttaaaatctcttcgtaacctgaaggaacattgtcacttttaaaa 27717507  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||  || | | |||| |||  | |||| ||| ||||| |||||||||||||    
T  27717508 gccatccacctcaacaattcaagagcttctgtcccatacaacccttctacttcatgcatactttttatcccatgacaggttagtaagtgtttgtctcgag 27717607  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
    |||||||||||||  |||||||||| || ||||||| ||||| ||| |||||||||||||||||||||||    
T  27717608 tggtaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgcttcat 27717677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 27337004 - 27337258
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| ||||||||||| |||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||  |||||||||||||||||||||    
T  27337004 agaacccactatttctaaaactaagggaatgcccgaaccatatgaaactgcacggtttaaaacatcttcataacttggcggtactttgttattcttaaaa 27337103  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||| ||||||||||||||| ||||||||| |||||||| | ||||  ||||  ||| |||||||||||  | |||| ||| ||||| ||||| ||||| |    
T  27337104 gccgtccacctcaacaattcaagagcttccttcccatatagccctcttactgcatatgttctttctatcccatgacaggttagtaagtgtttatctcggg 27337203  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    |||| |||||||| ||||||||| |||| ||||||| | ||| ||| ||||||||    
T  27337204 tggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagc 27337258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 27397744 - 27397998
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| ||||||||||| |||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||  |||||||||||||||||||||    
T  27397744 agaacccactatttctaaaactaagggaatgcccgaaccatatgaaactgcacggtttaaaacatcttcataacttggcggtactttgttattcttaaaa 27397843  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||| ||||||||||||||| ||||||||| |||||||| | ||||  ||||  ||| |||||||||||  | |||| ||| ||||| ||||| ||||| |    
T  27397844 gccgtccacctcaacaattcaagagcttccttcccatatagccctcttactgcatatgttctttctatcccatgacaggttagtaagtgtttatctcggg 27397943  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    |||| |||||||| ||||||||| |||| ||||||| | ||| ||| ||||||||    
T  27397944 tggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagc 27397998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 27610029 - 27610298
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| ||||||||||  ||||| |||||||| |||||||||| ||| ||||| |||||||  ||||| |||| |||||| || |||| | | ||||||    
T  27610029 agaacccactatttctataactaacggaaggccagaagcatatgcaacagcacggtttaaaatctcttcgtaacctgaaggaacattgtcacttttaaaa 27610128  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||| ||| ||| | | |||| |||  | |||| ||| || || |||||||||||||    
T  27610129 gccatccacctcaacaattcaagagcttctgtcccatacagcccttccactttatgcatactttttatcccatgacaggttagcaagtgtttgtctcgag 27610228  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
    ||| |||||||||  |||||||||| || ||||||| ||||| ||| |||||||||||||||||||||||    
T  27610229 tggcaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgcttcat 27610298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 27680223 - 27679955
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| |||| |||||| ||||| ||||||||  ||||||||| ||||||||| ||||||| |||||| |||| |||||| ||||| | | | ||||||    
T  27680223 agaacccactacttctaaaactaacggaaggccaaaagcatatgcaactgcacggtttaaaatgtcttcgtaacctgaaggaactttatcacttttaaaa 27680124  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||||||||||||||||||| |||||||||| || ||| |||||||||||||  ||  || ||||||||  | |||||| | ||||| | ||||| |||||    
T  27680123 gccatccacctcaacaattcaagagcttctgtctcattcaacccttctactgcatgtgtactttctatgccatgactgcttagtaagtctttgtttcgag 27680024  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttca 285  Q
    ||||||||||||| ||||||||||  || ||||||| | ||| ||| ||||||||||| ||||||||||    
T  27680023 tggtaatgatgactctgcttccacatccgaaccaatcaagtcctccagccaaagcatgcagttgcttca 27679955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 31285831 - 31285563
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| |||| |||||  ||||| |||||||| |||| ||||| ||||||||| ||||||| |||||| |||| |||||| ||||||| | | |||||||    
T  31285831 gaacccactacttctataactaatggaaggccagaagaatatgcaactgcacggtttaaaatgtcttcgtaacctgaaggaactttgtcacttttaaaag 31285732  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||| ||||||| |||||||||  |||||| |||||||||||||  ||  || |||| |||  | |||||  | ||||| ||||||||||||||    
T  31285731 ccatccaccttaacaattcaagagcttcagtcccattcaacccttctactgcatgtgtactttttatcccatgactacttagtaagtgtttgtctcgagt 31285632  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
    |||||||||||| ||||||||||| || ||||||| | ||| ||| ||||||||||| ||||| |||||    
T  31285631 ggtaatgatgactctgcttccacggccgaaccaatcaagtcctccagccaaagcatgcagttgattcat 31285563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 26624543 - 26624288
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| || |||||||| ||||| |||||||| |||||||||| ||||||||| ||||||| ||||||||||| |||||| ||||||| | | |||||||    
T  26624543 gaacccacaatttctaaaactaacggaaggccagaagcatatgcaactgcacggtttaaaatgtcttcataacctgaaggaactttgtcacttttaaaag 26624444  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||||||||||| | || | ||| ||||||||||||||||||||  ||  || |||| |||  | ||| || | ||||  ||||||| ||||||    
T  26624443 ccatccacctcaacaattcatgaccgtctgtcccatacaacccttctactgcatgtgtgctttttatcccatgagtgcttagtaggtgtttgtttcgagt 26624344  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcat 273  Q
    |||||| ||||||||||||||||| || ||||||| | | | ||| ||||||||||    
T  26624343 ggtaattatgaccctgcttccacgtccgaaccaatcaagccctccagccaaagcat 26624288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 26730520 - 26730265
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| || |||||||| ||||| |||||||| |||||||||| ||||||||| ||||||| ||||||||||| |||||| ||||||| | | |||||||    
T  26730520 gaacccacaatttctaaaactaacggaaggccagaagcatatgcaactgcacggtttaaaatgtcttcataacctgaaggaactttgtcacttttaaaag 26730421  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||||||||||| | || | ||| ||||||||||||||||||||  ||  || |||| |||  | ||| || | ||||  ||||||| ||||||    
T  26730420 ccatccacctcaacaattcatgaccgtctgtcccatacaacccttctactgcatgtgtgctttttatcccatgagtgcttagtaggtgtttgtttcgagt 26730321  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcat 273  Q
    |||||| ||||||||||||||||| || ||||||| | | | ||| ||||||||||    
T  26730320 ggtaattatgaccctgcttccacgtccgaaccaatcaagccctccagccaaagcat 26730265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 27426521 - 27426790
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| ||||||||||  ||||  |||||||| |||||||| | |||| ||||||| ||||  | ||||||||||||||| ||||||| ||| ||||||    
T  27426521 agaacccactatttctataactaccggaaggccagaagcataagcaactacacgattcaaaatcttttcataacttgaaggaactttgtcatttttaaaa 27426620  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||||||||||||||||||| |||||||||| || ||| |||||||| ||||  ||| ||| ||||||| || |||| ||  ||||| ||||| ||||| |    
T  27426621 gccatccacctcaacaattcaagagcttctgtcacattcaacccttttactgcatatgttttttctatctcatgacaggctagtaagtgtttatctcggg 27426720  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
    |||| |||||||| | ||||||| |||| ||||||| |  || ||| ||||||||||  |||||||||||    
T  27426721 tggtgatgatgactcggcttccaggaccgaaccaatcaactcctccagccaaagcattcagttgcttcat 27426790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 26885339 - 26885072
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||  ||||| ||||||||||||||||||||||||||||| |||||||  |||||||||| | |||| ||||||   |  ||||| |    
T  26885339 gaacccactatttctataactaaaggaaggcccgaagcatatgaaactgcacggtttaaaatctcttcataacctaaaggaactttg---tctttaaagg 26885243  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    ||| |||||||||||||| || ||||||||||||||| | ||||||||||  ||| ||||| ||||     || |  || ||||| ||||| || |||||    
T  26885242 ccagccacctcaacaattcaaaagcttctttcccatatatcccttctacttcatatgttctatctaccctatggcacgttagtaagtgtttatcacgagt 26885143  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcattt 288  Q
    ||||||||||||||||||||||||||||||||||| | ||| ||| |||||||| | ||| |||| |||||    
T  26885142 ggtaatgatgaccctgcttccacgaccaaaccaatcaagtcctccagccaaagcctctagctgctccattt 26885072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 37 - 273
Target Start/End: Original strand, 27591950 - 27592186
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| |||||||||  ||||||||| ||||||| |||||||||||||||||| ||||| | ||| ||||||||| |||||||||||||||     
T  27591950 ctaatggaaggccagaagcatatacaactgcacgctttaaaatgtcttcataacttgaaggaactttctcatttttaaaagccttccacctcaacaattc 27592049  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||||||| |||||| |||| ||||||||  ||| ||| |||||||  | |||| |   ||||| ||||| ||||| ||||| |||||||| ||||||    
T  27592050 aagagcttctgtcccattcaactcttctactgcatatgttttttctatcccatgacagtctagtaagtgtttatctcgggtggtgatgatgactctgctt 27592149  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagcat 273  Q
    ||| |||| ||||||| | ||| ||| ||||||||||    
T  27592150 ccaggaccgaaccaatcaagtcctccagccaaagcat 27592186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 27697495 - 27697755
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| ||||||||||  ||||| |||||||| ||| ||||||||||||||||| ||||||  ||||  || ||||| || || |||| | | ||||||    
T  27697495 agaacccactatttctataactaacggaaggccagaaacatatgaaactgcacgacttaaaatctctttgtaccttgatggaacattgtcacttttaaaa 27697594  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtc-agtaaatgtttgtctcga 215  Q
    ||||||||||||||||||| |||||||||| |||||| |||||||| ||||  ||||||| |||||||  | ||| ||||| ||||| ||||| |||||     
T  27697595 gccatccacctcaacaattcaagagcttctgtcccattcaacccttttactgcatacgttttttctatcccatga-tggtctagtaagtgtttatctcgg 27697693  T
Q  216 gtggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtag 277  Q
    ||||| |||||||| ||||||||| ||||||||||||   ||| ||| |||||||| |||||    
T  27697694 gtggtgatgatgactctgcttccaggaccaaaccaatcgagtcctccagccaaagcctgtag 27697755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 252
Target Start/End: Original strand, 27676549 - 27676764
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| |||||||||  ||||||||| ||||||| |||||||||||||||||| ||||| | ||| ||||||||| |||||||||||||||     
T  27676549 ctaatggaaggccagaagcatatacaactgcacgctttaaaatgtcttcataacttgaaggaactttctcatttttaaaagccttccacctcaacaattc 27676648  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||||||| || ||| |||| ||||||||  ||| ||| |||||||  | |||| |   ||||| ||||| ||||| ||||| |||||||| ||||||    
T  27676649 aagagcttctgtctcattcaactcttctactgcatatgttttttctatcccatgacagtctagtaagtgtttatctcgggtggtgatgatgactctgctt 27676748  T
Q  237 ccacgaccaaaccaat 252  Q
    ||| ||||||||||||    
T  27676749 ccaggaccaaaccaat 27676764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 27705175 - 27705398
Alignment:
Q  29 ttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctc 128  Q
    |||||| ||||| |||||||| |||||||||| ||||||||| ||||||| ||||||||||| |||||| || |||| ||| ||||||||||||||||||    
T  27705175 ttctaaaactaacggaaggccagaagcatatgcaactgcacggtttaaaatgtcttcataacctgaaggaacgttgtcatttttaaaagccatccacctc 27705274  T
Q  129 aacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatga 228  Q
    ||||||| |||||| ||| |||||| |||||||||||||  ||| ||| |||||||    |||  ||  ||||| ||||| | ||||||||| ||||| |    
T  27705275 aacaattcaagagcatctatcccattcaacccttctactggatatgttttttctatcctatgagaggctagtaagtgtttatttcgagtggtgatgataa 27705374  T
Q  229 ccctgcttccacgaccaaaccaat 252  Q
    | ||||||||| | ||||||||||    
T  27705375 ctctgcttccagggccaaaccaat 27705398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 37 - 252
Target Start/End: Original strand, 25492248 - 25492463
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| |||||||| | || |||| |  |||||| |||||||||| ||||||| ||| ||| ||| ||||||||||||||| | | |||||     
T  25492248 ctaatggaaggccagaagcataggtaattgcaagtgttaaaatgtcttcataaattgaaggaactctgtcatttttaaaagccatccacataagcaattc 25492347  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    ||||||||||| ||||| |||| ||||||||  || | | ||||||||  | |||||||| ||||  ||||||||||||||||||||||| || | ||||    
T  25492348 aagagcttcttccccatgcaactcttctactgcatgcatactttctatcccatgactggttagtatgtgtttgtctcgagtggtaatgataactccgctt 25492447  T
Q  237 ccacgaccaaaccaat 252  Q
    |||||||| |||||||    
T  25492448 ccacgaccgaaccaat 25492463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 26657216 - 26656984
Alignment:
Q  36 actaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaatt 135  Q
    ||||||||||| || ||||||||||||||||||||  ||||||  |||||||||| |||||| || ||||   ||| |||||||||||| ||||||||||    
T  26657216 actaagggaagtcctgaagcatatgaaactgcacggcttaaaatttcttcataacctgaaggaacattgtc--tct-aaaagccatccatctcaacaatt 26657120  T
Q  136 gaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgct 235  Q
     ||| |||||| ||||||| | ||||| |||   ||| ||| |||||||  |||||| | | || || ||||| |||| ||||||||||||||| |||||    
T  26657119 caagtgcttctgtcccatatagcccttttacggcatatgttatttctatcccgtgacagtttagcaagtgtttatctctagtggtaatgatgactctgct 26657020  T
Q  236 tccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||||| ||| ||||||| | ||| ||| ||||||||    
T  26657019 tccacaaccgaaccaatcaagtcctcctgccaaagc 26656984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 26763187 - 26762955
Alignment:
Q  36 actaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaatt 135  Q
    ||||||||||| || ||||||||||||||||||||  ||||||  |||||||||| |||||| || ||||   ||| |||||||||||| ||||||||||    
T  26763187 actaagggaagtcctgaagcatatgaaactgcacggcttaaaatttcttcataacctgaaggaacattgtc--tct-aaaagccatccatctcaacaatt 26763091  T
Q  136 gaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgct 235  Q
     ||| |||||| ||||||| | ||||| |||   ||| ||| |||||||  |||||| | | || || ||||| |||| ||||||||||||||| |||||    
T  26763090 caagtgcttctgtcccatatagcccttttacggcatatgttatttctatcccgtgacagtttagcaagtgtttatctctagtggtaatgatgactctgct 26762991  T
Q  236 tccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||||| ||| ||||||| | ||| ||| ||||||||    
T  26762990 tccacaaccgaaccaatcaagtcctcctgccaaagc 26762955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 26862853 - 26862618
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| |||||||| |  ||||| |||||||| |||||||||| ||||||||| |||||||| || | |||||| ||||| ||||    ||| ||||||    
T  26862853 agaacccactatttcgagaactaacggaaggccggaagcatatgcaactgcacggtttaaaacatcgttataactcgaaggaacttcaccatttttaaaa 26862754  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||||||||||||||||||| || ||||||| || |||  | ||| | |||   ||| |||||||||||  | || |  || ||||| ||||| |||||||    
T  26862753 gccatccacctcaacaattcaaaagcttctgtctcatgtagcccgtttaccgcatatgttctttctatcccatggcatgttagtaagtgtttatctcgag 26862654  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaat 252  Q
    ||||||||||||| || |||||| ||||||||||||    
T  26862653 tggtaatgatgactctacttccatgaccaaaccaat 26862618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 26144121 - 26143887
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    ||||||| ||||| || ||||| | |||| |||| |||||||  ||||||||||||||||| ||||||| ||| ||||||||||| | |||||||||||     
T  26144121 ctaagggcaggccagatgcataagtaactacacggtttaaaatttcttcataacttgaaggaactttgtcatttttaaaagccattcgcctcaacaattc 26144022  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||||||| || ||| |||  ||||||||  ||  || |||   ||  | |||| ||  ||||| ||||| || ||||||||||||||||||||||||    
T  26144021 aagagcttctgtctcattcaattcttctactgcatgtgtacttgtaatcccatgacaggctagtaagtgtttatcacgagtggtaatgatgaccctgctt 26143922  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||| |||| ||||||| | ||| ||| ||||||||    
T  26143921 ccatgaccgaaccaatcaagtcctccagccaaagc 26143887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 28782193 - 28782109
Alignment:
Q  198 agtaaatgtttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgct 282  Q
    ||||| |||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||| |||||||||||||||||||    
T  28782193 agtaagtgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgct 28782109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 25484312 - 25484078
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    ||||||| ||||| || ||||| | |||| |||| |||||||  ||||||||||||||||| ||||||| ||| ||||||||||| | |||||||||||     
T  25484312 ctaagggcaggccagatgcataagtaactacacggtttaaaatctcttcataacttgaaggaactttgtcatttttaaaagccattcgcctcaacaattc 25484213  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||||||| || ||| |||  ||||||||  ||  || |||   ||  | |||| ||  ||||| ||||| || ||||||||||||||||| ||||||    
T  25484212 aagagcttctgtctcattcaattcttctactgcatgtgtacttgtaatcccatgacaggctagtaagtgtttatcacgagtggtaatgatgactctgctt 25484113  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||| |||| ||||||| | ||| ||| ||||||||    
T  25484112 ccatgaccgaaccaatcaagtcctccagccaaagc 25484078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 25539796 - 25539562
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    ||||||| ||||| || ||||| | |||| |||| |||||||  ||||||||||| ||||| ||||||| ||| ||||| ||||| | |||||||||||     
T  25539796 ctaagggtaggccagatgcataagtaactacacggtttaaaatctcttcataactcgaaggaactttgtcatttttaaacgccattcgcctcaacaattc 25539697  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||||||| || ||| |||||||| ||||| ||  || |||   ||  | |||| ||  | ||||||| | || ||||||||||||||||| ||||||    
T  25539696 aagagcttctgtctcattcaacccttttactacatgtgtacttgtaatcccatgacaggctaataaatgtgtatcacgagtggtaatgatgactctgctt 25539597  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||| |||| ||||||| | ||| ||| ||||||||    
T  25539596 ccaggaccgaaccaatcaagtcctccagccaaagc 25539562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 25580975 - 25580741
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    ||||||| || || || ||||| | |||| |||| |||||||  ||||||||| ||||||| ||||||| ||| ||||||||||| | |||||||||||     
T  25580975 ctaagggcagcccagatgcataagtaactacacggtttaaaatctcttcataaattgaaggaactttgtcatttttaaaagccattcgcctcaacaattc 25580876  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||||||| || ||| |||  ||||||||  ||  || |||   ||  | |||| ||  ||||| ||||| || ||||||||||||||||| ||||||    
T  25580875 aagagcttctgtctcattcaattcttctactgcatgtgtacttgtaatcccatgacaggctagtaagtgtttatcacgagtggtaatgatgacactgctt 25580776  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||| |||| ||||||| | ||| ||| ||||||||    
T  25580775 ccatgaccgaaccaatcaagtcctccagccaaagc 25580741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 252
Target Start/End: Original strand, 27530233 - 27530445
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| |||||||| | || |||||| ||||||| |||||||| ||||||||| || || || ||  | ||||||||||||||||||||||     
T  27530233 ctaatggaaggccagaagcataagtaagtgcacggtttaaaatgtcttcatgacttgaaggaacatt-ttctt--tgaaagccatccacctcaacaattc 27530329  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
     ||||||||| || ||| |||||||||||||  ||  || ||||||||  | ||| |  | ||||| ||||||| |||||| ||||||||||| || ||     
T  27530330 gagagcttctgtcgcattcaacccttctactgcatgtgtactttctatcccatgaatctttagtaagtgtttgtttcgagtagtaatgatgactctactc 27530429  T
Q  237 ccacgaccaaaccaat 252  Q
    ||| |||| |||||||    
T  27530430 ccaggaccgaaccaat 27530445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 25512144 - 25512014
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| || ||||| | |||| |||| |||||||  ||||||||||||||||| ||||||| ||  ||||||||||| | |||||||||       
T  25512144 ctaacggaaggccagatgcataagtaactacacggtttaaaatctcttcataacttgaaggaactttgtcatgtttaaaagccattcgcctcaacaaaat 25512045  T
Q  137 aagagcttctttcccatacaacccttctact 167  Q
    |||||||||| || ||| |||||||||||||    
T  25512044 aagagcttctatctcattcaacccttctact 25512014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 26057175 - 26057045
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| || ||||| | |||| |||| |||||||  ||||||||||||||||| ||||||| ||| ||||||||  | |  ||||| ||||     
T  26057175 ctaacggaaggccagatgcataagtaactacacggtttaaaatatcttcataacttgaaggaactttgtcatttttaaaagcatttcggctcaataattc 26057076  T
Q  137 aagagcttctttcccatacaacccttctact 167  Q
    |||||||||| || ||| |||||||||||||    
T  26057075 aagagcttctgtctcattcaacccttctact 26057045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 26077145 - 26077015
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| || ||||| | |||| |||| |||||||  ||||||||||||||||| ||||||| ||| ||||||||  | |  ||||| ||||     
T  26077145 ctaacggaaggccagatgcataagtaactacacggtttaaaatatcttcataacttgaaggaactttgtcatttttaaaagcatttcggctcaataattc 26077046  T
Q  137 aagagcttctttcccatacaacccttctact 167  Q
    |||||||||| || ||| |||||||||||||    
T  26077045 aagagcttctgtctcattcaacccttctact 26077015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 25074956 - 25074913
Alignment:
Q  201 aaatgtttgtctcgagtggtaatgatgaccctgcttccacgacc 244  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||    
T  25074956 aaatgtttgtctcgagtggtaatgatgactctgctgccacgacc 25074913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 26950832 - 26950782
Alignment:
Q  201 aaatgtttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaa 251  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||| ||||    
T  26950832 aaatgtttgtcacgagtggtaatgatgactctgctgccacgaccaagccaa 26950782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 27215705 - 27215595
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| ||| |||| | || ||||||||| |||| | |||||||||||||||| ||||    ||| ||||| |||||| ||||||||||||     
T  27215705 ctaatggaaggccagaaacataagtaagtgcacgattaaaaatgccttcataacttgaaggaacttcaccatttttaaatgccatcaacctcaacaattt 27215606  T
Q  137 aagagcttctt 147  Q
    | |||||||||    
T  27215605 atgagcttctt 27215595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 26938118 - 26938062
Alignment:
Q  201 aaatgtttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaattaggt 257  Q
    ||||||||||||||||||||||  |||||  |||||||| |||||| ||||||||||    
T  26938118 aaatgtttgtctcgagtggtaacaatgactttgcttccatgaccaagccaattaggt 26938062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 26976037 - 26975990
Alignment:
Q  204 tgtttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaa 251  Q
    |||||||||||||||||||||||||| ||||| ||| |||||| ||||    
T  26976037 tgtttgtctcgagtggtaatgatgactctgctgccatgaccaagccaa 26975990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 26056999 - 26056941
Alignment:
Q  213 cgagtggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||||||||||||||||| ||||||||| |||| ||||||| | ||| ||| ||||||||    
T  26056999 cgagtggtaatgatgactctgcttccaagaccgaaccaatcaagtcctccagccaaagc 26056941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 26076969 - 26076911
Alignment:
Q  213 cgagtggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||||||||||||||||| ||||||||| |||| ||||||| | ||| ||| ||||||||    
T  26076969 cgagtggtaatgatgactctgcttccaagaccgaaccaatcaagtcctccagccaaagc 26076911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 28186585 - 28186535
Alignment:
Q  99 actttgttattcttaaaagccatccacctcaacaattgaagagcttctttc 149  Q
    ||||||||||| || |||||| ||||| ||||||||| |||||||||||||    
T  28186585 actttgttattttttaaagccttccacgtcaacaattcaagagcttctttc 28186535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 28235741 - 28235603
Alignment:
Q  114 aaagccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctc 213  Q
    |||||| ||||||||||||||| ||||||||| ||| |||  |||   |||| |   ||||||||||| ||  | ||||| |  || || ||||||||||    
T  28235741 aaagccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctc 28235642  T
Q  214 gagtggtaatgatgaccctgcttccacgaccaaaccaat 252  Q
    ||||||||||||| ||  | |||||| ||||||||||||    
T  28235641 gagtggtaatgatcactttacttccaggaccaaaccaat 28235603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 31289355 - 31289313
Alignment:
Q  204 tgtttgtctcgagtggtaatgatgaccctgcttccacgaccaa 246  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||    
T  31289355 tgtttgtctcaagtggtaatgatgactctgcttccaggaccaa 31289313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 25511984 - 25511911
Alignment:
Q  198 agtaaatgtttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||||| ||||| || ||||||||||||||||| ||||||||| |||| ||||| | | ||| ||| ||||||||    
T  25511984 agtaagtgtttatcacgagtggtaatgatgactctgcttccaggaccgaaccagtcaagtcctccagccaaagc 25511911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 26849796 - 26849751
Alignment:
Q  206 tttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaa 251  Q
    |||||||||||||||||||||||| ||||| ||| |||||| ||||    
T  26849796 tttgtctcgagtggtaatgatgactctgctaccatgaccaagccaa 26849751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 27215544 - 27215471
Alignment:
Q  198 agtaaatgtttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||||| ||| ||| |||||| ||||||||||| || ||||||| ||||||||||| | ||| ||| ||||||||    
T  27215544 agtaactgtctgtttcgagtcgtaatgatgactctacttccaccaccaaaccaatcaagtcctccagccaaagc 27215471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 26849984 - 26849924
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaa 78  Q
    ||||| |||| ||||||  |||| |||||||| |||||||||  |||||||||||||||||    
T  26849984 gaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacgatttaaaa 26849924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 8759 - 8491
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8759 gaacccactatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 8660  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    ||||||| |||||||| | |||||||||| | ||||||| |||||  |||  || ||| |||| |||  | |||||  | ||||| ||||||||||||||    
T  8659 ccatccatctcaacaactcaagagcttctgttccatacagccctttcacttcatgcgtactttttatcccatgacttcttagtaagtgtttgtctcgagt 8560  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
    |||||||||||||||||||||||| || ||||||| ||||| ||| |||||||||||||||||||||||    
T  8559 ggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgcttcat 8491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 12585 - 12853
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12585 gaacccactatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 12684  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    ||||||| |||||||| | |||||||||| | ||||||| |||||  |||  || ||| |||| |||  | |||||  | ||||| ||||||||||||||    
T  12685 ccatccatctcaacaactcaagagcttctgttccatacagccctttcacttcatgcgtactttttatcccatgacttcttagtaagtgtttgtctcgagt 12784  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
    |||||||||||||||||||||||| || ||||||| ||||| ||| |||||||||||||||||||||||    
T  12785 ggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgcttcat 12853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 3622 - 3886
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3622 gaacccactatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 3721  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    ||||||| |||||||| | |||||||||| ||||||||| |||||  |||  || ||| ||||||||  | |||||  | || || ||||||||||||||    
T  3722 ccatccatctcaacaactcaagagcttctgtcccatacagccctttcacttcatgcgtactttctatcccatgacttcttagcaagtgtttgtctcgagt 3821  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgct 282  Q
    |||||||||||||||||||||| | |||||||||| ||||  ||| |||||||| ||||||||||    
T  3822 ggtaatgatgaccctgcttccaaggccaaaccaatcaggttctcctgccaaagcctgtagttgct 3886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 29272748 - 29273015
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29272748 gaacccactatttctaaaactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataaattgaaggtactttgttattcttaaaag 29272847  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||||||||  || | | |||| |||  | ||||  || || || ||||||||||||||    
T  29272848 ccatccacctcaacaattcaagagcttttgtcccatacagcccttctacttcatgcatactttttatcccatgacaagttagcaagtgtttgtctcgagt 29272947  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttca 285  Q
     |||||||||||  |||||||||| || ||||||| | ||| ||| ||||||||||||||||||||||    
T  29272948 agtaatgatgactttgcttccacggccgaaccaatcatgtcctccagccaaagcatgtagttgcttca 29273015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 36 - 252
Target Start/End: Original strand, 28163304 - 28163520
Alignment:
Q  36 actaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaatt 135  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  28163304 actaagggaaggcctgaagcatatgaaactgcacgatttaaaacatcttcataacttgaaggaactttgttatttttaaaagccatccacgtcaacaatt 28163403  T
Q  136 gaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgct 235  Q
     ||| |||||  |||||||||||||||||||   || | | ||||||||  | |||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  28163404 caagcgcttccgtcccatacaacccttctaccgaatgcatactttctatcccatgacaggttagtaagtgtttgtctcgagtggtaatgatgaccctgct 28163503  T
Q  236 tccacgaccaaaccaat 252  Q
    ||||||||| |||||||    
T  28163504 tccacgaccgaaccaat 28163520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 28126585 - 28126838
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaag 117  Q
    ||||| ||||||||||  |||||||||||||| ||||||||||||||||| || |||||||| || |||||||||||||| ||||||||||  |||||||    
T  28126585 gaacccactatttctataactaagggaaggcctgaagcatatgaaactgcccggtttaaaacatcatcataacttgaaggaactttgttatgtttaaaag 28126684  T
Q  118 ccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagt 217  Q
    |||||||||||||||||| ||| |||| | |  |||||||||||| |||   || ||| ||||||||  | |||| ||| ||||| ||||| ||||||||    
T  28126685 ccatccacctcaacaattcaagtgcttttgttacatacaacccttttaccgcatgcgtactttctatcccatgacaggttagtaagtgtttctctcgagt 28126784  T
Q  218 ggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagc 271  Q
    ||||||||||||  ||||||||||||| ||||||| | ||| ||| ||||||||    
T  28126785 ggtaatgatgactttgcttccacgaccgaaccaatcaagtcctccagccaaagc 28126838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 267249 - 267506
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| || |||||||| ||||| |||||||| |||||||| | |||||||||| ||||||  || |  ||| |||| || |||   | ||| ||||||    
T  267249 agaacccacaatttctaaaactaacggaaggccagaagcataagcaactgcacgaattaaaatctcattgtaaattgatggaactggatcatttttaaaa 267348  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||||  || ||| ||||||||  | |||| ||| ||||| || ||||||||||    
T  267349 gccatccaactcaacaattcaagagcttcggtcccatacaacccttctacttcatgcgtactttctatcccatgacaggttagtaattgcttgtctcgag 267448  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatg 274  Q
    |||||| || ||| |||||||||   || ||||||| | ||| ||| |||||||||||    
T  267449 tggtaacgacgactctgcttccatagccgaaccaatcaagtcctccagccaaagcatg 267506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 2448 - 2717
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| ||||||||||  ||||| |||||||| |||||||||| ||||||||| |||||||  ||||| |||| |||||| || |||| | | ||||||    
T  2448 agaacccactatttctataactaacggaaggccagaagcatatgcaactgcacggtttaaaatctcttcgtaacctgaaggaacattgtcacttttaaaa 2547  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||  || | | |||| |||  | |||| ||| ||||| |||||||||||||    
T  2548 gccatccacctcaacaattcaagagcttctgtcccatacaacccttctacttcatgcatactttttatcccatgacaggttagtaagtgtttgtctcgag 2647  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
    |||||||||||||  |||||||||| || ||||||| ||||| ||| |||||||||||||||||||||||    
T  2648 tggtaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgcttcat 2717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 60842 - 60573
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| ||||||||||  ||||  |||||||| |||||||| | |||| ||||||| ||||  | ||||||||||||||| ||||||| ||| ||||||    
T  60842 agaacccactatttctataactaccggaaggccagaagcataagcaactacacgattcaaaatcttttcataacttgaaggaactttgtcatttttaaaa 60743  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||||||||||||||||||| |||||||||| || ||| |||||||| ||||  ||| ||| ||||||| || |||| ||  ||||| ||||| ||||| |    
T  60742 gccatccacctcaacaattcaagagcttctgtcacattcaacccttttactgcatatgttttttctatctcatgacaggctagtaagtgtttatctcggg 60643  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
    |||| |||||||| | ||||||| |||| ||||||| |  || ||| ||||||||||  |||||||||||    
T  60642 tggtgatgatgactcggcttccaggaccgaaccaatcaactcctccagccaaagcattcagttgcttcat 60573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 18075034 - 18074765
Alignment:
Q  17 agaaccaactatttctaagactaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaa 116  Q
    |||||| ||||||||||  ||||  |||||||| |||||||| | |||| ||||||| ||||  | ||||||||||||||| ||||||| ||| ||||||    
T  18075034 agaacccactatttctataactaccggaaggccagaagcataagcaactacacgattcaaaatcttttcataacttgaaggaactttgtcatttttaaaa 18074935  T
Q  117 gccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgag 216  Q
    ||||||||||||||||||| |||||||||| || ||| |||||||| ||||  ||| ||| ||||||| || |||| ||  ||||| ||||| ||||| |    
T  18074934 gccatccacctcaacaattcaagagcttctgtcacattcaacccttttactgcatatgttttttctatctcatgacaggctagtaagtgtttatctcggg 18074835  T
Q  217 tggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttcat 286  Q
    |||| |||||||| | ||||||| |||| ||||||| |  || ||| ||||||||||  |||||||||||    
T  18074834 tggtgatgatgactcggcttccaggaccgaaccaatcaactcctccagccaaagcattcagttgcttcat 18074765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 37 - 280
Target Start/End: Original strand, 18678485 - 18678728
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| ||||||||   ||||||||| |||||||  ||||||||||||||||| ||||||| | | |||||||||||||||||||||||||     
T  18678485 ctaatggaaggccagaagcatacacaactgcacgttttaaaatctcttcataacttgaaggaactttgtaacttttaaaagccatccacctcaacaattc 18678584  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||| | || || | ||| ||||| ||||  || | |  ||||||| || ||| || | ||||| |||||||  |||||||||||||| || ||||||    
T  18678585 aagagcattttccctagacatcccttttacttcatgcataatttctatctcatgattgcttagtaagtgtttgttacgagtggtaatgataactctgctt 18678684  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagcatgtagttg 280  Q
    |||| ||| ||||||| | ||| ||||||||||||||| |||||    
T  18678685 ccacaaccgaaccaatcacgtcctccggccaaagcatgcagttg 18678728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 274
Target Start/End: Original strand, 18654402 - 18654639
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| |||||||| | ||||||||| |||||||  ||||||||||||||||| ||||||| | | |||||||||||||||||||||||||     
T  18654402 ctaatggaaggccagaagcatacgcaactgcacggtttaaaatctcttcataacttgaaggaactttgtaaattttaaaagccatccacctcaacaattc 18654501  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||| | || |  | ||| ||||| ||||  || | |  ||||||| || ||| || | ||||| |||||||  |||||||||||||| || ||||||    
T  18654502 aagagcattttccgtagacatcccttttacttcatgcataatttctatctcatgattgcttagtaagtgtttgttacgagtggtaatgataactctgctt 18654601  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagcatg 274  Q
    |||| ||| ||||||| | ||| ||| |||||||||||    
T  18654602 ccacaaccgaaccaatcacgtcctccagccaaagcatg 18654639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 285
Target Start/End: Original strand, 18723010 - 18723258
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| |||||||| | |||||| || |||||||  ||||||||||||||||| ||||||| | | |||||||||||||||||||||||||     
T  18723010 ctaatggaaggccagaagcatacgcaactgctcggtttaaaatctcttcataacttgaaggaactttgtaacttttaaaagccatccacctcaacaattc 18723109  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||| | || |  | ||| ||||| ||||  || | |  ||||||  || ||| |||| ||||| |||||||  |||||||||||||| || ||||||    
T  18723110 aagagcattttccgtagacatcccttttacttcatgcataatttctacctcatgattggttagtaattgtttgttacgagtggtaatgataactctgctt 18723209  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttca 285  Q
    |||   || ||||||| ||||| ||| ||||||||||| ||||| ||||    
T  18723210 ccagagccgaaccaatcaggtcctccagccaaagcatgcagttgtttca 18723258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 280
Target Start/End: Original strand, 18698325 - 18698568
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| ||||||||   ||||||| | || ||||  ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||     
T  18698325 ctaatggaaggccagaagcatacacaactgcatggttaaaaatctcttcataacttgaaggaactttgtaatttttaaaagccatccacctcaacaattc 18698424  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||| | || |  | ||| ||||| ||||  ||   |  ||||||| || ||| |||| ||||| |||||||  |||||||||||||| || ||||||    
T  18698425 aagagcattttccgtagacatcccttttacttcatggataatttctatctcatgattggttagtaagtgtttgttacgagtggtaatgataactctgctt 18698524  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagcatgtagttg 280  Q
    ||||  || ||||||| | ||| ||| ||||||||||| |||||    
T  18698525 ccacagccgaaccaatcacgtcctccagccaaagcatgcagttg 18698568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 280
Target Start/End: Original strand, 18730429 - 18730672
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| ||||||||   ||||||| | || ||||  ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||     
T  18730429 ctaatggaaggccagaagcatacacaactgcatggttaaaaatctcttcataacttgaaggaactttgtaatttttaaaagccatccacctcaacaattc 18730528  T
Q  137 aagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgctt 236  Q
    |||||| | || |  | ||| ||||| ||||  ||   |  ||||||| || ||| |||| ||||| |||||||  |||||||||||||| ||  |||||    
T  18730529 aagagcattttccgtagacatcccttttacttcatggataatttctatctcatgattggttagtaagtgtttgttacgagtggtaatgataactatgctt 18730628  T
Q  237 ccacgaccaaaccaattaggtcgtccggccaaagcatgtagttg 280  Q
    ||||  || ||||||| | ||| ||| ||||||||||| |||||    
T  18730629 ccacagccgaaccaatcacgtcctccagccaaagcatgcagttg 18730672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 5090046 - 5090127
Alignment:
Q  204 tgtttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaattaggtcgtccggccaaagcatgtagttgcttca 285  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||||| ||||  |||||||||| | |||||||| ||||    
T  5090046 tgtttgtctcgagtggtaatgatgactctgctgccaagaccaaaccaatcaggttctccggccaaaacctgtagttgtttca 5090127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 18688551 - 18688656
Alignment:
Q  37 ctaagggaaggcccgaagcatatgaaactgcacgatttaaaacgtcttcataacttgaaggtactttgttattcttaaaagccatccacctcaacaattg 136  Q
    |||| |||||||| ||||||||    |||||||| |||||||  ||||||||||||||||| ||||| | | | |||||||||||||||||||||||||     
T  18688551 ctaatggaaggccagaagcatacacgactgcacggtttaaaatctcttcataacttgaaggaactttataacttttaaaagccatccacctcaacaattc 18688650  T
Q  137 aagagc 142  Q
    ||||||    
T  18688651 aagagc 18688656  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 16692058 - 16691905
Alignment:
Q  99 actttgttattcttaaaagccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtca 198  Q
    ||||||||||| ||||||| | |||||||||| | ||  ||||||||||  ||||  || || || |||  |||  |||| || ||| | ||||| || |    
T  16692058 actttgttatttttaaaagtcttccacctcaatagttctagagcttcttctccatttaaaccatccacttcatatattctatcaataccatgacttgtta 16691959  T
Q  199 gtaaatgtttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaat 252  Q
    |||| |||||||||||||||||||||||||| || |||||| ||||||||||||    
T  16691958 gtaagtgtttgtctcgagtggtaatgatgactctacttccaggaccaaaccaat 16691905  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 17992308 - 17992358
Alignment:
Q  201 aaatgtttgtctcgagtggtaatgatgaccctgcttccacgaccaaaccaa 251  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  17992308 aaatgtttgtctcgagtggtaatgatgactctgctgccacgaccaagccaa 17992358  T

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Target: scaffold1870 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 41 - 1
Alignment:
Q  18 gaaccaactatttctaagactaagggaaggcccgaagcata 58  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  41 gaacccactatttctaaaactaagggaaggcccgaagcata 1  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 35903 - 35765
Alignment:
Q  114 aaagccatccacctcaacaattgaagagcttctttcccatacaacccttctactatatacgttctttctatatcgtgactggtcagtaaatgtttgtctc 213  Q
    |||||| ||||||||||||||| ||||||||| ||| |||  |||   |||| |   ||||||||||| ||  | ||||| |  || || ||||||||||    
T  35903 aaagccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctc 35804  T
Q  214 gagtggtaatgatgaccctgcttccacgaccaaaccaat 252  Q
    ||||||||||||| ||  | |||||| ||||||||||||    
T  35803 gagtggtaatgatcactttacttccaggaccaaaccaat 35765  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 57285 - 57335
Alignment:
Q  99 actttgttattcttaaaagccatccacctcaacaattgaagagcttctttc 149  Q
    ||||||||||| || |||||  ||||||||||||||| |||||||||||||    
T  57285 actttgttatttttgaaagcattccacctcaacaattcaagagcttctttc 57335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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