View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4995_low_2 (Length: 520)
Name: NF4995_low_2
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4995_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 11 - 495
Target Start/End: Complemental strand, 29819800 - 29819315
Alignment:
| Q |
11 |
tatactggtggtcttccattggcacttgaggtgtttggttcctatctttatggaagaaatgttgatctttggcatagtgccattnnnnnnntaagaagtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29819800 |
tatactggtggtcttccattggcacttgaggtgtttggttcctatctttatggaagaaatgttgatctttggcatagtgccattaaaaaaataagaagtg |
29819701 |
T |
|
| Q |
111 |
tgcctctacgtaaaatccaagataaactggaaataagttatgagagcttagatccaatggagaaggatgtatttcttgatattgcatgtttcttcaaggg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29819700 |
tgcctctacgtaaaatccaagataaactggaaataagttatgagagcttagatccaatggagaaggatgtatttcttgatattgcgtgtttcttcaaggg |
29819601 |
T |
|
| Q |
211 |
aatgaagatagataaagtaatagatatattagaaaattgtggttatttccccaaaattataattcaagttttgattgacagatctttgataactctagat |
310 |
Q |
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| T |
29819600 |
aatgaagatagataaagtaatagatatattagaaaattgtggttatttccccaaaattataattcaagttttgattgacagatctttgataactctagat |
29819501 |
T |
|
| Q |
311 |
cgggtcaataataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgtatttcaggaatctccaaatgatcctggcagatgtagcaggt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29819500 |
cgggtcaataataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgtatttcaggaatctccaaatgatcctggcagatgtagcaggt |
29819401 |
T |
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| Q |
411 |
tatggtctaaagaggacatcgattctgtgttgacaaaaaataaggtgc-tactattttatttgccactgttggataattggtttta |
495 |
Q |
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| T |
29819400 |
tatggtctaaagaggacatcgattctgtgttgacaaaaaataaggtgcttactattttttttgccactgttggataattggtttta |
29819315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 503
Target Start/End: Complemental strand, 29828039 - 29827550
Alignment:
| Q |
15 |
ctggtggtcttccattggcacttgaggtgtttggttcctatctttatggaagaaatgttgatctttggcatagtgccattnnnnnnntaagaagtgtgcc |
114 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| || |
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| T |
29828039 |
ctggtggtcttccattggcacttgaggtgttaggttcctatctttatggaagaagtgttgatctttggcatagtgctattaaaaatataagaagtgctcc |
29827940 |
T |
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| Q |
115 |
tctacgtaaaatccaagataaactggaaataagttatgagagcttagatccaatggagaaggatgtatttcttgatattgcatgtttcttcaagggaatg |
214 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||| || ||||||| |||||| | |||||||||||||||||| |
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| T |
29827939 |
tctacgtgaaatccaagataaactgaaaataagttatgagagcttagatgccatggagaagaatatatttctagatatttcctgtttcttcaagggaatg |
29827840 |
T |
|
| Q |
215 |
aagatagataaagtaatagatatattagaaaattgtggttatttccccaaaattataattcaagttttgattgacagatctttgataactctagatcggg |
314 |
Q |
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|||| ||||||||||||| ||||||||||||||||||| ||| |||| |||||| ||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
29827839 |
aagagagataaagtaataaatatattagaaaattgtggatatcaccccgaaattacaattcaagttttgatagacagatctttgataactctagatcgtg |
29827740 |
T |
|
| Q |
315 |
tcaataataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgtatttcaggaatctccaaatgatcctggcagatgtagcaggttatg |
414 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| | ||||||| ||||| |
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| T |
29827739 |
tcaataataaactggggatgcatgatttgcttcaagaaatgggaaggaatattgtaattcaggaatctccaaatgatccaggcaaacgtagcagattatg |
29827640 |
T |
|
| Q |
415 |
gtctaaagaggacatcgattctgtgttgacaaaaaataaggt-gctactattttatttgccactgttggataattggttttacatgaagt |
503 |
Q |
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||||||||| ||||| ||| ||||||||||||||||||||| | ||||| ||| | |||||| |||||||||||||||||| ||||||| |
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| T |
29827639 |
gtctaaagaagacattgatcgtgtgttgacaaaaaataaggtggttactaatttttctgccacggttggataattggttttatatgaagt |
29827550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 29572237 - 29572677
Alignment:
| Q |
16 |
tggtggtcttccattggcacttgaggtgtttggttcctatctttatggaagaaatgttgatctttggcatagtgccattnnnnnnntaagaagtgtgcct |
115 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||| || |||||||| | || |
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| T |
29572237 |
tggtggtcttccattggcacttgaggtgttaggttcctatctgtatggaagaaatattgatgtttggcatagtgctgttaaaaaattaagaagttttccc |
29572336 |
T |
|
| Q |
116 |
ctacgtaaaatccaagataaactggaaataagttatgagagcttagatccaatggagaaggatgtatttcttgatattgcatgtttcttcaagggaatga |
215 |
Q |
| |
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| | || | |||||||||| ||| ||||||||||||| || |||||| | |||||||||||| | ||||| |||||||| |||||||| |||||||||| |
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| T |
29572337 |
caccctagagtccaagataacctgaaaataagttatgatagtttagataccatggagaaggatatttttctagatattgcttgtttctttaagggaatga |
29572436 |
T |
|
| Q |
216 |
agatagataaagtaatagatatattagaaaattgtggttatttccccaaaattataattcaagttttgattgacagatctttgataactctagatcgggt |
315 |
Q |
| |
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|| ||||||||| |||||||||||||||| |||||| |||||||| ||||| ||||||| |||||||||| ||||| ||||||||||||||| || |
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| T |
29572437 |
agggagataaagttatagatatattagaaagttgtggctatttccctcaaattggaattcaaattttgattgaaagatcattgataactctagattctgt |
29572536 |
T |
|
| Q |
316 |
caataataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgtatttcaggaatctccaaatgatcctggcagatgtagcaggttatgg |
415 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||| ||| |
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| T |
29572537 |
gaataataaattgggaatgcatgatttgcttcaagaaatgggcagggatattgtatttcaggaatctccaaatgatccttgtagacgtagcaggttgtgg |
29572636 |
T |
|
| Q |
416 |
tctaaagaggacatcgattctgtgttgacaaaaaataaggt |
456 |
Q |
| |
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||| |||||||||| ||| || ||||||||||| ||||| |
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| T |
29572637 |
tctcaagaggacattgatcgcgtcttgacaaaaaacaaggt |
29572677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 369
Target Start/End: Original strand, 35686356 - 35686399
Alignment:
| Q |
326 |
ttggggatgcatgatttgcttcaagaaatgggcaggaatattgt |
369 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||| |
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| T |
35686356 |
ttggggatgcatgatttgcttcaagaaatgggtagaaatattgt |
35686399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 11124009 - 11123611
Alignment:
| Q |
20 |
ggtcttccattggcacttgaggtgtttggttcctatctttatggaagaaatgttgatctttggcatagtgccattnnnnnnntaagaagtgtgcctctac |
119 |
Q |
| |
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||||||||||| ||||||||||| || ||||| ||||| ||||||||| |||||| ||||||||||||| | ||||||||| |||| |
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| T |
11124009 |
ggtcttccattagcacttgaggtattaggttcacatcttcatggaagaactgttgaggtttggcatagtgctttagaacaaataagaagtggtcctcact |
11123910 |
T |
|
| Q |
120 |
gtaaaatccaagataaactggaaataagttatgagagcttagatccaatggagaaggatgtatttcttgatattgcatgtttcttcaagggaatgaagat |
219 |
Q |
| |
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|||||||| |||| | || ||||||| ||||| || ||| | | |||||||| || | ||||| |||||||||||||||||||| |||||| | || |
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| T |
11123909 |
acaaaatccatgatacattgaaaataagctatgatagtttacaatctatggagaaaaatttgtttctagatattgcatgtttcttcaaaggaatggacat |
11123810 |
T |
|
| Q |
220 |
agataaagtaatagatatattagaaaattgtggttatttccccaaaattataattcaagttttgattgacagatctttgataactctagatcgggtcaat |
319 |
Q |
| |
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|||| |||||||||| || |||||| |||||||||| ||||||||| |||| | |||||||||| ||||||||| |||| | ||| ||| | |
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| T |
11123809 |
agatgaagtaatagaaattttagaaggttgtggttatcatcccaaaattggaattgacattttgattgaaagatctttggcaactttggataggggggac |
11123710 |
T |
|
| Q |
320 |
aataaattggggatgcatgatttgcttcaagaaatgggcaggaatattgtatttcaggaatctccaaatgatcctggcagatgtagcaggttatggtct |
418 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||| | | | || |||||||||||| |
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| T |
11123709 |
aataagttgtggatgcatgatttgcttcaagaaatgggaaggaatattgtgtttgaagaatctccaaatgatcctggaaaacgcagtaggttatggtct |
11123611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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