View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4995_low_3 (Length: 480)
Name: NF4995_low_3
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4995_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 129 - 461
Target Start/End: Complemental strand, 7294068 - 7293718
Alignment:
| Q |
129 |
aactaggaattagatggataagatttagttagttagttagataaaaattaactttatcacatgattta---------------accttagttagttagct |
213 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7294068 |
aactaggaattagtcggataagatttagttagttagttagataaaaattaactttatcacatgatttacttgttagtcaagtaaccttagttagttagct |
7293969 |
T |
|
| Q |
214 |
taaatcctctctatacataggattacgccactttacataatttcattcatattctctcattgttattcatctcacacttagagtttagcttttcaatcca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7293968 |
taaatcctctctatacataggattacgccactttatataatttcattcatattctctcattgttattcatctcacacttagagtttagcttttcaatcca |
7293869 |
T |
|
| Q |
314 |
aca---tatcaatgattgcattgaaaataattggtaatttgtaatgtctcgcgccgtgctaaacattttctttttatgtcattatagggaaagggaattt |
410 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7293868 |
acaacatatcaatgattgcattgaaaataattggtaatttgtaatgtctcgcgccgtgctaaacattttctttttatgtcattatagggaaagggaattt |
7293769 |
T |
|
| Q |
411 |
ctataacaaaacatataagagaggaagccataactagcctctactccagca |
461 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7293768 |
ctttaacaaaacatataagagaggaagccataactagcctctactccagca |
7293718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 40739822 - 40739785
Alignment:
| Q |
272 |
attgttattcatctcacacttagagtttagcttttcaa |
309 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40739822 |
attgttattcatctcacacttagtgtttagcttttcaa |
40739785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University