View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4995_low_4 (Length: 440)
Name: NF4995_low_4
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4995_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Original strand, 29208363 - 29208778
Alignment:
| Q |
20 |
ctgagtttgaacaaaaactattttttgcaattagaaattatgttagagggtactgnnnnnnntctaggtatctcaccattcctttagaatcagtactact |
119 |
Q |
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| T |
29208363 |
ctgagtttgaacaaaaactattttttgcaattagcaattatgttagagggtactgaaaaaaatctaggtatctcaccattcctttagaatcagtactact |
29208462 |
T |
|
| Q |
120 |
ccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaattgcaaaagaaagtgaaacaattaggacatagtattaa |
219 |
Q |
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| T |
29208463 |
ccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaaatgcaaaagaaagtgaaacaattaggacatagtattaa |
29208562 |
T |
|
| Q |
220 |
ttaactaagaggaagtagaacaaaactacattataaaaaatgaatcactagtccaacctacaatgtcgatttagtgtttgctatcgccatgtttaagtgg |
319 |
Q |
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| T |
29208563 |
ttaactaagaggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtgg |
29208662 |
T |
|
| Q |
320 |
aataaatgtgtaactatatatccgttgttgaattgagggggctatataaagtgtgagaaaagaggaagtttggaggttggtaactgtctgaaaaatttaa |
419 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29208663 |
aataaatgtgtaactatgtaaccgttgttgaattgagggggctatataaagagtgagaaaagatgaagtttggaggttggtaactgtctgaaaaatttaa |
29208762 |
T |
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| Q |
420 |
tttaatctctgctgct |
435 |
Q |
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|||||| |||| |||| |
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| T |
29208763 |
tttaatttctgttgct |
29208778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 38378240 - 38378088
Alignment:
| Q |
82 |
tctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaa |
181 |
Q |
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|||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||| ||||||||||||||||| || |||||||||||||| |
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| T |
38378240 |
tctaggtatctcaccattcctttagaatcaataatactccaatgagatgaagactgtgaagtgttcttgacaaacttttcaccgcagaaaattaaggaaa |
38378141 |
T |
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| Q |
182 |
ttgcaaa--agaaagtgaaacaattaggacatagtattaattaactaagaggaa |
233 |
Q |
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| T |
38378140 |
atgcaaagtagaatg-gaaacaattaggaattagtattaattaaccaagaggaa |
38378088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 38377686 - 38377636
Alignment:
| Q |
362 |
tatataaagtgtgagaaaagaggaagtttggaggttggtaactgtctgaaa |
412 |
Q |
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|||||| || ||||||||| | ||||||||||||||||||||||||||||| |
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| T |
38377686 |
tatatatagagtgagaaaatatgaagtttggaggttggtaactgtctgaaa |
38377636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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