View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4995_low_7 (Length: 344)
Name: NF4995_low_7
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4995_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 11696637 - 11696966
Alignment:
| Q |
1 |
ggaaggtgtagggttgaagaaagcacacttgttaatgtgctctctgcttgcactcatttagggtctcctgatcttggaaagtgtatacacgggatcttgt |
100 |
Q |
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| T |
11696637 |
ggaaggtgtagggttgaagaaagcacacttgttaatgtgctctctgcttgcactcatttagggtctcctgatcttggaaagtgtatacacgggatcttgt |
11696736 |
T |
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| Q |
101 |
tgaggaacattagtgaactcaatgttgttgtgaagacttcgttaattgatatgtatgtcaagtgtggatgtcttgagaaaggtttacgcgtattcgagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |
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| T |
11696737 |
tgaggaacattagtgaactcaatgttgttgtgaagacttcgttaattgatatgtatgtcaagagtggatgtcttgagaaaggtttacgcgtattcaaaaa |
11696836 |
T |
|
| Q |
201 |
tatgtcggagaagaatagattttcttacactgtaatgatatctggtcttgcgattcatggacgtggtaaggaagctcttaaagttttctcagaaatgatt |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696837 |
tatgtcggagaagaatagatattcttacactgtaatgatatctggtcttgcgattcatggacgtggtaaggaagctcttaaagttttctcagaaatgatt |
11696936 |
T |
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| Q |
301 |
gaagaaggtttggcaccagatgatgatgtc |
330 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
11696937 |
gaagaaggtttggcaccagatgatgttgtc |
11696966 |
T |
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