View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4996-Insertion-2 (Length: 542)
Name: NF4996-Insertion-2
Description: NF4996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4996-Insertion-2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 268 - 536
Target Start/End: Complemental strand, 44005160 - 44004891
Alignment:
| Q |
268 |
tatttgaagtttaagttttagtattctaacacataaactgtaccattgctcaattctcaggttgcatggttaggagtccccactgctccagcttggcttc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44005160 |
tatttgaagtttaagttttagtattctaacacaaaaactgtaccattgctcaattctcaggttgcatgggtaggagtccccactgctccagcttggcttc |
44005061 |
T |
|
| Q |
368 |
ctacatacatgcttatcaaggtaatgcttaacttgttccaattaaatctgatgtaaattgtttaactttatctagatatacctgacctattttcatttta |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
44005060 |
ctacatacatgcttatcaaggtaatgcttaacttgttccaatgaaatctgatgtaaattgtttaactttatctacatatacgcgacctattttcatttta |
44004961 |
T |
|
| Q |
468 |
gttgctttgaaagcacccaagtcctaactcttacttttttgttgca-tcagagaagctcaattatgagag |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44004960 |
gttgctttgaaagcacccaagtcctaactcttacttttttgttgcagtcagagaagctcaattatgagag |
44004891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 44005432 - 44005232
Alignment:
| Q |
8 |
cacccaccctattataaagg-ttagactacttttatgaagatcgtggggaggtaaacaaacgaacaccaaaagattatgaaaacaaaatagtttatatga |
106 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44005432 |
cacccaccctattacaaaggattagactacatttatgaagaccgtggtgaggtaaacaaacaaacaccaaaagattatgaaaacaaaatagtttatatga |
44005333 |
T |
|
| Q |
107 |
ttagtgtttatctaactagatatttctaactgtttttgtaggtcttggagatgcgtatatttgaaacaggagagcatgctcttgtaagtaacttgtcaat |
206 |
Q |
| |
|
|||||||||||||||||||| || || |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44005332 |
ttagtgtttatctaactagaaatgtcaaactgtatttgtaggtcttggatatgcgtatatttgaaacaggagagcatgcacttgtaagtaacttgtcaat |
44005233 |
T |
|
| Q |
207 |
a |
207 |
Q |
| |
|
| |
|
|
| T |
44005232 |
a |
44005232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University