View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4996-Insertion-5 (Length: 357)
Name: NF4996-Insertion-5
Description: NF4996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4996-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 18763184 - 18762836
Alignment:
| Q |
8 |
aaatgatcaaagttaagaagggtacatgtaaggtaacaatttgattgaagtactcttcaaaatgcgatgctccagatatatcttttctgttaatagtaag |
107 |
Q |
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| T |
18763184 |
aaatgatcaaagttaagaagggtacatgtaaggtaacaatttgattgaagtactcttcaaaatgcggtgctccagatatatcttttctgttaatagtaag |
18763085 |
T |
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| Q |
108 |
ataaatgttaactaagaagaatattttaggtattgcttttacgcgttaccacctaggtctaacgcgggtggttattgtgtgtgttgtaaacctcagagag |
207 |
Q |
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| T |
18763084 |
ataaatgttaactaagaagaatattttaggtattgcttttacgcgttaccacctaggtctaacgcgggtggttagtgtgcgtgttgtaaacctcagagag |
18762985 |
T |
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| Q |
208 |
tttgattcgtattcgtacaaaagaggtgatgcttacgcattgataaagtaaccagcatctgagatgcatttcacgttagatcctttcggtaaaagagctc |
307 |
Q |
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| T |
18762984 |
tttgattcgtattcgtacaaaagaggtgatgcttacgcattgataaagtaaccagcatctgagatgcatttcacgttagatcctttcggtaaaagagctc |
18762885 |
T |
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| Q |
308 |
gaaagcgatcacaatgcagtaatgaggccaatcctccagctgaacatcc |
356 |
Q |
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| T |
18762884 |
gaaagcgatcacaatgcagtaatgaggtcaatcctccagctgaacatcc |
18762836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 10797380 - 10797499
Alignment:
| Q |
237 |
tgcttacgcattgataaagtaaccagcatctgagatgcatttcacgttagatcctttcggtaaaagagctcgaaagcgatcacaatgcagtaatgaggcc |
336 |
Q |
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| T |
10797380 |
tgcttacgcgttgataaagtaaccggcatctgagaggcatttcactttagctcctctcggtaaaagagcacgaaagcgatcacaatgcagaattgaagcc |
10797479 |
T |
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| Q |
337 |
aatcctccagctgaacatcc |
356 |
Q |
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| T |
10797480 |
aatccaccagctgaacatcc |
10797499 |
T |
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