View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4996-Insertion-6 (Length: 320)

Name: NF4996-Insertion-6
Description: NF4996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4996-Insertion-6
NF4996-Insertion-6
[»] chr7 (1 HSPs)
chr7 (7-176)||(9798117-9798286)
[»] chr4 (10 HSPs)
chr4 (176-320)||(45177109-45177253)
chr4 (49-176)||(45175559-45175686)
chr4 (181-317)||(44666552-44666689)
chr4 (181-317)||(44685876-44686013)
chr4 (176-320)||(45093590-45093735)
chr4 (249-320)||(35816689-35816760)
chr4 (242-319)||(45102799-45102876)
chr4 (181-320)||(45568273-45568412)
chr4 (36-75)||(45094818-45094857)
chr4 (77-143)||(45569688-45569755)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 9798286 - 9798117
Alignment:
Q  7 agaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798286 agaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg 9798187  T
Q  107 cataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcatttcttcgaagg 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9798186 cataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcattttttcgaagg 9798117  T

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Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 176 - 320
Target Start/End: Original strand, 45177109 - 45177253
Alignment:
Q  176 gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45177109 gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac 45177208  T
Q  276 tggctatgatgagattcatgatgttcatagcttagtagcatccag 320  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  45177209 ttgctatgatgagattcatgatgttcatagcttagtagcatccag 45177253  T

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Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 45175559 - 45175686
Alignment:
Q  49 ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45175559 ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta 45175658  T
Q  149 aagggggttgttgtcatttcttcgaagg 176  Q
    ||||||||||||||||||| ||||||||    
T  45175659 aagggggttgttgtcatttattcgaagg 45175686  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 44666689 - 44666552
Alignment:
Q  181 gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc 279  Q
    |||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||| ||| |  |||| | |||||||||| || |||||||||||||||  ||    
T  44666689 gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc 44666590  T
Q  280 tatgatgagattcatgatgttcatagcttagtagcatc 317  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44666589 tatgatgagattcttgatgttcatagcttagtagcatc 44666552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 44686013 - 44685876
Alignment:
Q  181 gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc 279  Q
    |||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||| ||| |  |||| | |||||||||| || |||||||||||||||  ||    
T  44686013 gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc 44685914  T
Q  280 tatgatgagattcatgatgttcatagcttagtagcatc 317  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44685913 tatgatgagattcttgatgttcatagcttagtagcatc 44685876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 176 - 320
Target Start/End: Complemental strand, 45093735 - 45093590
Alignment:
Q  176 gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataaca 274  Q
    |||| ||||||||||||||||||| |||| || |||  || || ||||||||||| | | | ||||||| | | |||||||||||||||||||||| |||    
T  45093735 gttgggagttcattattttgtcatttgtagcaaaatgtattgtttttaacgtattgttaccatttgttttagtatgagcaggttggaattgctaattaca 45093636  T
Q  275 ctggctatgatgagattcatgatgttcatagcttagtagcatccag 320  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||    
T  45093635 ctggctatcatgtgattcatgatgttcatagcttagtagcatccag 45093590  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 35816689 - 35816760
Alignment:
Q  249 tgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccag 320  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35816689 tgagcaggttggaattgctaattacactggctatggtgagattcatgatgttcatagcttagtagcatccag 35816760  T

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Target: chr4; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 45102876 - 45102799
Alignment:
Q  242 tttaatttgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagtagcatcca 319  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  45102876 tttagtttgagcaggttggagttgctaataacactggctatgatgagtttcatgatgttcatagcttagtatcatcca 45102799  T

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Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 320
Target Start/End: Complemental strand, 45568412 - 45568273
Alignment:
Q  181 gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataacactggc 279  Q
    ||||||||||| ||||||| |||| ||||| | | ||| |||||| |||| | ||| ||||||| | | ||||||||| |||||||||||| |||||||     
T  45568412 gagttcattatgttgtcatttgtagcacaa-atacagtttttaacatattgttatcatttgttttagtatgagcaggtaggaattgctaattacactggt 45568314  T
Q  280 tatgatgagattcatgatgttcatagcttagtagcatccag 320  Q
    ||  |||||||||||||||||||||||||||||||||||||    
T  45568313 tacaatgagattcatgatgttcatagcttagtagcatccag 45568273  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 45094857 - 45094818
Alignment:
Q  36 tagtagatttgctttgatcctgtaattgaagaacaactta 75  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  45094857 tagtagatttgctttgatcctgcaactgaagaacaactta 45094818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 45569755 - 45569688
Alignment:
Q  77 ggctgctgctttttgtgtaatagatcgctgcat-aattacttgcgggtagttgggtttggaaatttgg 143  Q
    |||| ||||||||| |||||||| ||||||||| |||||||||| |||||| || | |||||||||||    
T  45569755 ggcttctgctttttatgtaatagttcgctgcataaattacttgctggtagtaggatgtggaaatttgg 45569688  T

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