View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4996_high_2 (Length: 263)
Name: NF4996_high_2
Description: NF4996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4996_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 6924899 - 6925146
Alignment:
| Q |
1 |
ccaattgtaggggtaaagtacagaatttgtaaattggaccataaattttgtactctctaaccttaaattattgcatnnnnnnnctataatagtccctctg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
6924899 |
ccaattataggggtaaagtacagaatttgtaaattggaccttaaattttgtactctctaaccttaaattattgcttaaaaaaactataatagtcactctg |
6924998 |
T |
|
| Q |
101 |
ttgttagaataatgagtcaacgacacaattaacataa---tattgcccaataaaaactctaacatgatcaatcattgtgttcnnnnnnnncttgctattt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6924999 |
ttgttagaataatgagtcaacgacacaattaacataatactattgcccaataaaaactctaacatgatcaatcattgtgttc-tttttttcttgctattt |
6925097 |
T |
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| Q |
198 |
ctacataatttgttttggaaattggcagttttcaatgtttggttctttg |
246 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6925098 |
ctacataatatgttttggaaattggcagttttcaatgtttggttctttg |
6925146 |
T |
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