View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4996_low_1 (Length: 290)
Name: NF4996_low_1
Description: NF4996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4996_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 23432644 - 23432909
Alignment:
| Q |
18 |
acttgccttgccgccttttcatagccggctttgtactgtaatgaaattttacgcttcaattcctcaatttcagccttcaacttattaataataaccttgt |
117 |
Q |
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| T |
23432644 |
acttgccttaccgccttttcatagccggctttgtactgtaatgaaattttacgcttcaattcctcaatttcagccttcaacttattaataaaaaccttgt |
23432743 |
T |
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| Q |
118 |
gagcttgttcgtttacgagtaagtttactttattcttcgaattttcatccatcaagtctttttctcttgctaccattcgattcttttccaggcttgaata |
217 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
23432744 |
gagcatgttcgtttacgagtaattttactttattcttcgaattttcatccatcaagtctttttcccttgctatcattcgattcttttccaggcttgaata |
23432843 |
T |
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| Q |
218 |
ttccaaagttttcttcaatttgttcagttcatctttcagactagtcatctctgccatattcttctc |
283 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23432844 |
ttcgaaagttttcttcaatttgttcagttcatctttcagactagtcatctctgccatattcttctc |
23432909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 23447502 - 23447249
Alignment:
| Q |
30 |
gccttttcatagccggctttgtactgtaatgaaattttacgcttcaattcctcaatttcagccttcaacttattaataataaccttgtgagcttgttcgt |
129 |
Q |
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| T |
23447502 |
gccttatcatagccagctttgtactgcaactcaattccactcttcaattcttcaatttcagccttcaacttctcaacattaaccctgtgagcatcttctt |
23447403 |
T |
|
| Q |
130 |
ttacgagtaagtttactttattcttcgaattttcatccatcaagtctttttctcttgctaccattcgattcttttccaggcttgaatattccaaagtttt |
229 |
Q |
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| T |
23447402 |
ttatgagtaattttattcgactgttcgaattttccttttttaattctttttctcttgctaccatttcattcttttccaggcttgaatattccaaagtttt |
23447303 |
T |
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| Q |
230 |
cttcaatttgttcagttcatctttcagactagtcatctctgccatattcttctc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23447302 |
cttcaatttgttcagttcatctttcagactagtcatctcaaccatattcttctc |
23447249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 23437486 - 23437546
Alignment:
| Q |
223 |
aagttttcttcaatttgttcagttcatctttcagactagtcatctctgccatattcttctc |
283 |
Q |
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||||||||||||||||||||| |||||||| ||| | |||||||| ||||| |||||||| |
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| T |
23437486 |
aagttttcttcaatttgttcaattcatcttcaagagtcgtcatctcagccatcttcttctc |
23437546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 21138749 - 21138540
Alignment:
| Q |
28 |
ccgccttttcatagccggctttgtactgtaatgaaattttacgcttcaattcctcaatttcagccttcaacttattaataataaccttgtgagcttgttc |
127 |
Q |
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||||||| ||||| |||||||||||||| | ||| |||||| ||||| ||| |||||||||||||||||||| | || |||| |||| ||| | ||| |
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| T |
21138749 |
ccgccttatcataaccggctttgtactgcactgacattttatacttcagttcttcaatttcagccttcaacttgtcaacggtaactttgtaagcatcttc |
21138650 |
T |
|
| Q |
128 |
gtttacgagtaagtttactttattcttcgaattttcatccatcaagtctttttctcttgctaccattcgattcttttccaggcttgaatattccaaagtt |
227 |
Q |
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||||| ||||| || |||||||||| |||||||| ||||| | ||||||||||||||| ||||||| ||||||||| | ||| | ||||||||| |
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| T |
21138649 |
ttttacaagtaatttccctttattctttgaattttcgtccattaggtctttttctcttgccgccattcgcctcttttccaagattgtttcttccaaagtc |
21138550 |
T |
|
| Q |
228 |
ttcttcaatt |
237 |
Q |
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||||| |||| |
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|
| T |
21138549 |
ttctttaatt |
21138540 |
T |
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