View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4996_low_3 (Length: 250)
Name: NF4996_low_3
Description: NF4996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4996_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 6923462 - 6923310
Alignment:
| Q |
91 |
tattaaaattctattttttaatagaatgttgattaaatatgtcaaatatagatgtaggttagtatgattaaatcggataaaatgttaacagatttatgat |
190 |
Q |
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| T |
6923462 |
tattaaaattctattttataatagaatgttgattaaatatgtcaaatatagatgtaggttagtatgattaaatcggataaaatgttaacagatttatgat |
6923363 |
T |
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| Q |
191 |
ttaacacaaattacaaaatttaatataataa---taattatatttacattcat |
240 |
Q |
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| T |
6923362 |
ttaacacaaattacaaaatttaatataataataataattatatttacattcat |
6923310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6924774 - 6924676
Alignment:
| Q |
1 |
tttgagtatgacctttgacgtgttagaggccaattttaaagctttacctacttaaaacttacgttactatttattttagatgacatatcttattaaaat |
99 |
Q |
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| T |
6924774 |
tttgagtatgacctttgacgtgttagaggccaattttaaagctttacctacttaaaacttacgttactatttattttagatgacacatcttattaaaat |
6924676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 18988910 - 18988965
Alignment:
| Q |
169 |
aaaatgttaacagatttatgatttaacacaaattacaaaatttaatataataataa |
224 |
Q |
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| T |
18988910 |
aaaatgttaacaaatttataaattaattcaaattacaaaatataatataataataa |
18988965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 817745 - 817696
Alignment:
| Q |
174 |
gttaacagatttatgatttaacacaaattacaaaatttaatataataata |
223 |
Q |
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| T |
817745 |
gttaacaaatttatgatttaattcaaagtacaaaatataatataataata |
817696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 38303895 - 38303949
Alignment:
| Q |
169 |
aaaatgttaacagatttatgatttaacacaaattacaaaatttaatataataata |
223 |
Q |
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|||| ||||||| |||||| |||| | ||||||||||||||||||||||||||| |
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| T |
38303895 |
aaaaagttaacaaatttataattttatccaaattacaaaatttaatataataata |
38303949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 47044504 - 47044541
Alignment:
| Q |
182 |
atttatgatttaacacaaattacaaaatttaatataat |
219 |
Q |
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| T |
47044504 |
atttatgatttaacacaaattacaaaatctactataat |
47044541 |
T |
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