View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4997-Insertion-1 (Length: 956)
Name: NF4997-Insertion-1
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4997-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 431 - 926
Target Start/End: Original strand, 52580058 - 52580553
Alignment:
| Q |
431 |
cgacggaactagagccaaatatttagtatagctttggtcttaaagaaaatgtgaaatagaaaaatgttggcccaaatacatagcatcaaccgtcgcctag |
530 |
Q |
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| T |
52580058 |
cgacggaactagagccaaatatttagtatagctttggtcttaaagaaaatgtgaaatagaaaaatgttggcccaaatacatagcatcaaccgtcacctag |
52580157 |
T |
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| Q |
531 |
ttgacatgaaacaagaagacgtttctttcgattatctgtataatgtatagagagacaaattaacagttacttgtataaattgtatttacataagtttata |
630 |
Q |
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| T |
52580158 |
ttgacatgaaacaagaagacgtttctttcgattatctgtataatgtatagagagacaaattaacagttacttgtataaattgtatttacataagtttata |
52580257 |
T |
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| Q |
631 |
aaattcattatgattatatcatcatgtacaaaataaacattgtgcccactacaaaactttcaaaatttactatttgaggcacaagtttattattggttag |
730 |
Q |
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| T |
52580258 |
aaattcattatgattatatcatcatgtacaaaataaacattgtgcccactacaaaactttcaaaatttactatttgaggcacaagtttattattggttag |
52580357 |
T |
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| Q |
731 |
tctaaaagaaaagcttagaattgaatctttgcttgcagctacgccttgtaagttttggcttagtgcttcgtggagtttccactgcctcaggcttgaggtt |
830 |
Q |
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| T |
52580358 |
tccaaaagaaaagcttagaattgaatctttgcttgcagctacgccttgtaagttttggcttagtgcttcgtggagtttccactgcctcaggcttgaggtt |
52580457 |
T |
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| Q |
831 |
taagcctaacatgttccacatcaactccacatctctgtaaccgcacatttctacatcacctcgaagtttcatcaatccaccaccaacgcctccacc |
926 |
Q |
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| T |
52580458 |
taagcctaacatgttccacatcaactccacatctctgtaaccgcacatttctacatcacctcgaagtttcatcaatccaccaccaacacctccacc |
52580553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 52579681 - 52579870
Alignment:
| Q |
7 |
aacactaacatgagatatcacaagttgtagatgattgtgtttgttaatttatttgattaaatgttctatttctaaccggtgaaaataaatcataagaaaa |
106 |
Q |
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| T |
52579681 |
aacactaacatgagatatcacaagttgtagatgattgtgtttgttaatttatttgattaaatgttctatttctaactggtgaaaataaatcataagaaaa |
52579780 |
T |
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| Q |
107 |
atatatgtttaaagaggtcaattcctctaaccgaattcaactatcttaaagaattagtttttgcaattgtgagagaaataatcttgactt |
196 |
Q |
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| T |
52579781 |
atatatgtttaaagaggtcaattcctctaaccgaattcaactatcttaaagaattagtttttgcaattgtgagagaaataatcttgactt |
52579870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 52579879 - 52579986
Alignment:
| Q |
267 |
ccttgccacttgcaccgttagcattgaaagatagctatacttcatgcattgctgcaatttcgtcatattttccaaagctgaactttagtgctaaacatag |
366 |
Q |
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| T |
52579879 |
ccttgccacttgcaccgttagcattgaaagatagctatacttcatgcattgctacaatttcgtcatattttccaaagctgaactttagtgctaaacatag |
52579978 |
T |
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| Q |
367 |
tctatatt |
374 |
Q |
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| T |
52579979 |
tctatatt |
52579986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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