View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4997-Insertion-11 (Length: 267)

Name: NF4997-Insertion-11
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4997-Insertion-11
NF4997-Insertion-11
[»] chr7 (1 HSPs)
chr7 (7-176)||(9798117-9798286)
[»] chr4 (7 HSPs)
chr4 (49-176)||(45175559-45175686)
chr4 (176-267)||(45177109-45177200)
chr4 (181-232)||(44666638-44666689)
chr4 (181-232)||(44685962-44686013)
chr4 (36-75)||(45094818-45094857)
chr4 (77-143)||(45569688-45569755)
chr4 (176-267)||(45093643-45093735)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 9798286 - 9798117
Alignment:
Q  7 agaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798286 agaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg 9798187  T
Q  107 cataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcatttcttcgaagg 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9798186 cataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcattttttcgaagg 9798117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 45175559 - 45175686
Alignment:
Q  49 ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45175559 ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta 45175658  T
Q  149 aagggggttgttgtcatttcttcgaagg 176  Q
    ||||||||||||||||||| ||||||||    
T  45175659 aagggggttgttgtcatttattcgaagg 45175686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 45177109 - 45177200
Alignment:
Q  176 gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgct 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45177109 gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgct 45177200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 44666689 - 44666638
Alignment:
Q  181 gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattat 232  Q
    |||||||||| ||||||| ||||| ||||||| ||||| |||||||||||||    
T  44666689 gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattat 44666638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 44686013 - 44685962
Alignment:
Q  181 gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattat 232  Q
    |||||||||| ||||||| ||||| ||||||| ||||| |||||||||||||    
T  44686013 gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattat 44685962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 45094857 - 45094818
Alignment:
Q  36 tagtagatttgctttgatcctgtaattgaagaacaactta 75  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  45094857 tagtagatttgctttgatcctgcaactgaagaacaactta 45094818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 45569755 - 45569688
Alignment:
Q  77 ggctgctgctttttgtgtaatagatcgctgcat-aattacttgcgggtagttgggtttggaaatttgg 143  Q
    |||| ||||||||| |||||||| ||||||||| |||||||||| |||||| || | |||||||||||    
T  45569755 ggcttctgctttttatgtaatagttcgctgcataaattacttgctggtagtaggatgtggaaatttgg 45569688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 45093735 - 45093643
Alignment:
Q  176 gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttg-tttaatttgagcaggttggaattgct 267  Q
    |||| ||||||||||||||||||| |||| || |||  || || ||||||||||| | | | |||| |||| | |||||||||||||||||||    
T  45093735 gttgggagttcattattttgtcatttgtagcaaaatgtattgtttttaacgtattgttaccatttgttttagtatgagcaggttggaattgct 45093643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University