View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4997-Insertion-4 (Length: 774)
Name: NF4997-Insertion-4
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4997-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 8 - 725
Target Start/End: Original strand, 23177706 - 23178428
Alignment:
| Q |
8 |
ttaaatcctctatcgccacagtctgcacaaatggtgcataattttatatttccaactatattgacagtataagcagagaaaagactagaagcatgctaag |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23177706 |
ttaaatcctctatcgccacagtctgcacaaatggtgcataattttatatttccaactatatggacagtataagcagagaaaagactagaagcatgctaag |
23177805 |
T |
|
| Q |
108 |
ttgaacagagtacggtccacggtcttactaagcaacccaccgaaatcgaacagtaaacccgaaaagagaaacctgggggttagagcactataaataagag |
207 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23177806 |
ttgaacagagtacggtccacggtcttactaagcaatccaccgaaattgaacagtaaacccgaaaagagaaacctgggggttagagcactataaataagag |
23177905 |
T |
|
| Q |
208 |
gtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcaggaagtctatatattgcacatccga |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23177906 |
gtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcaggaagtctatatattgcacatctga |
23178005 |
T |
|
| Q |
308 |
gcaccagtacagtacatacaaaaaaataataaattacatcacttgatttaaagttct---nnnnnnnnnnntttacatcacttgatttaaagttcttatt |
404 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23178006 |
gcaccagtacagtacatac-aaaaaataataaattacatcacttgatttaaagttctaaaaaaaataaaaatttacatcacttgatttaaagttcttatt |
23178104 |
T |
|
| Q |
405 |
atattatactccgcgttgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctcca |
504 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23178105 |
atattatactctgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctcca |
23178204 |
T |
|
| Q |
505 |
tcacagaagaatatgtaaccattcattccaccactgcatgtat-cataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataaatag |
603 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23178205 |
tcacagaaggatatgtaaccattcattccaccactgcatgtatccataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataaatag |
23178304 |
T |
|
| Q |
604 |
aatatatgatgtatacttggacgataaaaaacatgccattctgcttgtccggagtttggaaaaataaacacccaccgtcaaaggtttcaaaa-tattggt |
702 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23178305 |
aatatatgatgtatacttggacgataaaaaacatgccattctgcttgtccagagtttggaaaaataaacacccaccgtcaaaggtttcaaaactattggt |
23178404 |
T |
|
| Q |
703 |
tttttactt-ccgattaacacaat |
725 |
Q |
| |
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||||||||| || ||||||||||| |
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| T |
23178405 |
tttttacttcccaattaacacaat |
23178428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 377 - 617
Target Start/End: Original strand, 23890924 - 23891165
Alignment:
| Q |
377 |
ttacatcacttgatttaaagttcttattatattatactccgcgttgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtga |
476 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23890924 |
ttacatcacttgattttaagttcttattatattatactccgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtga |
23891023 |
T |
|
| Q |
477 |
cctgaagaaaggagggcaaggttctccatcacagaagaatatgtaaccattcattccaccactgcatgtat-cataaataacatgagaaaatagtcgagc |
575 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |
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| T |
23891024 |
cctgaagaaaggacggcaaggttctccatcacagaaggatatgtaaccattcattccaccactgcatgtatccataaatatcatcagaaaatagtcgagc |
23891123 |
T |
|
| Q |
576 |
aagatcttcattttgtcattataaatagaatatatgatgtat |
617 |
Q |
| |
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| T |
23891124 |
aagatcttaattttgtcattataaataggatatatgatgtat |
23891165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 161 - 364
Target Start/End: Original strand, 23890743 - 23890947
Alignment:
| Q |
161 |
taaacccgaaaagagaaacctggggg--ttagagcactataaataagaggtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggt |
258 |
Q |
| |
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||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23890743 |
taaacccgaaaagagaaacatgggagagttagagcactataaataagaggtcggtagagagtttaataccttttttggaaatttaactccatgtagtggt |
23890842 |
T |
|
| Q |
259 |
cggttaatatgttcatgcgcatcaggaagtctatatattgcacatccgagcaccagtacagtacatacaaaaaaataataaattacatcacttgatttaa |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||| |||||||| | ||||||||||||||||||| | |
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| T |
23890843 |
cggttaatatgttcatgcgcatcaggaagtctatatattgcacatctgaggtcaagtatagtacata-aaaaaaattaaaaattacatcacttgatttta |
23890941 |
T |
|
| Q |
359 |
agttct |
364 |
Q |
| |
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|||||| |
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| T |
23890942 |
agttct |
23890947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23890695 - 23890732
Alignment:
| Q |
8 |
ttaaatcctctatcgccacagtctgcacaaatggtgca |
45 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
23890695 |
ttaaatcctctatcgccacagtctgcataaatggtgca |
23890732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 5e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 425 - 599
Target Start/End: Complemental strand, 7868891 - 7868716
Alignment:
| Q |
425 |
aaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctccatcacagaagaatatgtaacc |
524 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||| ||| |||||||||| |
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| T |
7868891 |
aaacttacatgacatgattatccatgatgtcttccatgcctgcaataggggacctgaagatgggagggcaaggttctccactacataaggatatgtaacc |
7868792 |
T |
|
| Q |
525 |
attcattccaccactgcatgtat-cataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataa |
599 |
Q |
| |
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||||||||||||||||||||||| | |||||||||| ||||| || |||||||||||||| | |||| |||||||| |
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| T |
7868791 |
attcattccaccactgcatgtatccctaaataacatcagaaagtaatcgagcaagatcttaaatttgccattataa |
7868716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 186 - 315
Target Start/End: Complemental strand, 7869182 - 7869053
Alignment:
| Q |
186 |
gttagagcactataaataagaggtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcagga |
285 |
Q |
| |
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||||||||||||| |||||| | ||||||||| ||||||||||| |||||||| |||||||||||| ||||||| ||||||||||| ||||| ||| |
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| T |
7869182 |
gttagagcactattaataagcagcaggtagaaaatttaataccttctttggaaacttaactccatgtggtggtcgagctatatgttcatgtgcatctgga |
7869083 |
T |
|
| Q |
286 |
agtctatatattgcacatccgagcaccagt |
315 |
Q |
| |
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||||||||||||||||||| |||||||||| |
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| T |
7869082 |
agtctatatattgcacatctgagcaccagt |
7869053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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