View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4997-Insertion-5 (Length: 696)
Name: NF4997-Insertion-5
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4997-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 672; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 8 - 695
Target Start/End: Original strand, 34291390 - 34292077
Alignment:
| Q |
8 |
tttctaacacttttgtatcatccaaaataagtgatattgcgttgatctcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaattt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291390 |
tttctaacacttttgtatcatccaaaataagtgatattgcgttgatctcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaattt |
34291489 |
T |
|
| Q |
108 |
atcttctgcatttttaaatgttatagatataacaacattgcgcacaatatcgtgcatcttcacagcacattgctgtccaacaacaagaactttcgtctta |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291490 |
atcttctgcatttttaaatgctatagatataacaacattgcgcacaatatcgtgcatcttcacagcacattgctgtccaacaacaagaactttcgtctta |
34291589 |
T |
|
| Q |
208 |
gatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34291590 |
gatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaat |
34291689 |
T |
|
| Q |
308 |
aggaatgtcaaagtcttctggaaataatccacaaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34291690 |
aggaatgtcaaagtcttctggaaataatccacaaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtag |
34291789 |
T |
|
| Q |
408 |
atatgttttccaacacccaaggaggaagatgattgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34291790 |
atatgttttccaacacccaaggaggaagatgattgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttc |
34291889 |
T |
|
| Q |
508 |
caattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatcttttctatctacaacttcccctgacagctc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
34291890 |
caattgtcgcaattgcaagcggtaagccgccacattcctttgcaacctcttttgctattggattgatatcatttctatctacaacttcccctcacagctc |
34291989 |
T |
|
| Q |
608 |
tcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcc |
695 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34291990 |
tcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcc |
34292077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 695
Target Start/End: Original strand, 34565878 - 34566572
Alignment:
| Q |
8 |
tttctaacacttttgtatcatccaaaataagtgatattgcgttgatctcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaattt |
107 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| | |||||| ||||| |
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|
| T |
34565878 |
tttctaactctttagtatcatccaaaataagtgatattgcattgatctcgttcaatttctcttcttttagactcttaaaggtgtactttaccatgaattt |
34565977 |
T |
|
| Q |
108 |
atcttctgcatttttaaatgttatagatataacaacattgcgcacaatatcgtgcatcttcaca-------gcacattgctgtccaacaacaagaacttt |
200 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||| ||||| |||| |||||||| || |||||| |
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|
| T |
34565978 |
atcttctgcatttttaaatgctactgatataacaacattacgcacaatatcatgcatcttcacacaccctggcacactgctatccaacaataaaaacttt |
34566077 |
T |
|
| Q |
201 |
cgtcttagatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaac |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||| | |||||||| | |||| ||||||| |||||||||||| ||||| ||||||||| |
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|
| T |
34566078 |
ctccttagatcttccaccaatgtatgcactcgatttcttgcttcccatgatgcactgatgtctttgaacggacccaagccaaaaccatgacacaataaac |
34566177 |
T |
|
| Q |
301 |
tttcaataggaatgtcaaagtcttctggaaataatccacaaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccg |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| | |
|
|
| T |
34566178 |
tttcaatgggaatgtcaaagtcttctggatacaatccacaaagcataaggaagagcttatgttctctgctgtccaaaaactttaaactaagctcaatgct |
34566277 |
T |
|
| Q |
401 |
ggggtagatatgttttccaacacccaaggaggaagatgattgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagt |
500 |
Q |
| |
|
|||||||| | ||||||||| | || ||| ||||||||||| | |||| ||||| |||||||| |||||||| |||||||||||||| || ||| |
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|
| T |
34566278 |
ggggtagacaaattttccaacgtctgagaagggagatgattgaaaatttcttaaatgtctaagtgcatcctcccatgccgacttcccttcattacttagt |
34566377 |
T |
|
| Q |
501 |
gctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatcttttctatctacaacttcccctg |
600 |
Q |
| |
|
|||||||||| |||| |||||||||| || |||||||||||||||||||||||||| |||||||||| |||||||| | | ||||||||| | | |||| |
|
|
| T |
34566378 |
gctcttccaactgtcacaattgcaagaggcaagccaccacattcctttgcaacctcacttgctattgggttgatatcatatgtatctacaattccacctg |
34566477 |
T |
|
| Q |
601 |
acagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcc |
695 |
Q |
| |
|
||| ||||||||| ||||||||||| |||||||| ||||| || ||||||||||| | || ||||||| |||| |||||||||||||||| |
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| T |
34566478 |
acatctctcgaaatagataccaagcctcatcctccgacaacacagaaacttgaaaattcacattgcatcccaagtttttgcacactttttcatcc |
34566572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 174 - 349
Target Start/End: Original strand, 34554377 - 34554552
Alignment:
| Q |
174 |
acattgctgtccaacaacaagaactttcgtcttagatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatc |
273 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||| ||||| || ||| ||||||||||||||||||| ||| || || ||||||||||| |
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|
| T |
34554377 |
acattgctatccaacaacaagaagcatctctttagatcgtccacaaaactattcactcggtttcttgctttccatggctcaccgatagctttgaacaatc |
34554476 |
T |
|
| Q |
274 |
ccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataag |
349 |
Q |
| |
|
||||||| | || ||| | ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
34554477 |
ccaagcccattgcgtgacataataaactttcaataggtatgtcaaagtcttccggaaacaatccacaaagcataag |
34554552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 498 - 577
Target Start/End: Complemental strand, 34371825 - 34371746
Alignment:
| Q |
498 |
agtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatc |
577 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| || || |||||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
34371825 |
agtgctcgtccaactgttgcaattgcaaggggcaaaccaccacattcccttgcaacctcacttgctattggattgatatc |
34371746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 34372020 - 34371977
Alignment:
| Q |
300 |
ctttcaataggaatgtcaaagtcttctggaaataatccacaaag |
343 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
34372020 |
ctttctataggaatgtcaaagtcctctggaaacaatccacaaag |
34371977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 34554723 - 34554776
Alignment:
| Q |
517 |
caattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggat |
570 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
34554723 |
caatagcaagaggcaagcctccacattcctttgcaacttgttttgctattggat |
34554776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 695
Target Start/End: Original strand, 15895579 - 15896262
Alignment:
| Q |
19 |
tttgtatcatccaaaataagtgatattgcgttgatctcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaatttatcttctgcat |
118 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||||| || ||||||| |||||||||| |||||||||| ||||||| ||||||||||||| |||| || |
|
|
| T |
15895579 |
tttgaatcatccaagataagtgatattgctttgatgtcattcaatttctcttcttttaaactcttaaagttgtattgcaccataaatttatgttcttcac |
15895678 |
T |
|
| Q |
119 |
ttttaaatgttatagatataacaacattgcgcacaatatcgtgcatcttcaca-------gcacattgctgtccaacaacaagaactttcgtcttagatc |
211 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||||||| |||||||| ||| ||||||| || |||| |||||| ||||||| |||||| |
|
|
| T |
15895679 |
ttttaaataaaaatgatataacaacatttcgcacaatatcatgcatctttacacatcctcgcacattactttccagcaacaaaaactttctctttagatt |
15895778 |
T |
|
| Q |
212 |
ttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaatagga |
311 |
Q |
| |
|
|| ||||||||||||||| ||| |||||||| | |||||||| |||||| |||||||| |||||| || | ||||||| ||| |||| |||||||||| |
|
|
| T |
15895779 |
atctaccaatgtatgcacttggtctcttgcttcccatgatgcagtaatgtgtttgaacattcccaaacccactgcatgatgcaacaaacattcaatagga |
15895878 |
T |
|
| Q |
312 |
atgtcaaagtcttctggaaataatccacaaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatat |
411 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||||||||| || ||||| | |||||| || |||||||||||||||||||||||||| || |||| || | |
|
|
| T |
15895879 |
atatcaaagtcttcaggaaacaatccacaaagcataaggaatagcttgtattctttgtttcccaaaaactttaaactaagctcaatgcgagggtggacaa |
15895978 |
T |
|
| Q |
412 |
gttttccaacacccaaggaggaagatgattgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaat |
511 |
Q |
| |
|
|||| ||||| | | |||||||||||||||| | |||||||| | |||| |||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
15895979 |
atttttcaacatctgacgaggaagatgattgaaaatttcttaattgtttaagtgtgtcttcccatgcagacttcccttcaatgcttagtgctcttccaac |
15896078 |
T |
|
| Q |
512 |
tgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatcttttctatctacaacttcccctgacagctctcga |
611 |
Q |
| |
|
|||| |||||||||| || |||||||||||| |||||||||||||| ||||||||||||||||||| | | | | |||||| || |||| || ||| || |
|
|
| T |
15896079 |
tgtcacaattgcaaggggcaagccaccacatgcctttgcaacctctcttgctattggattgatatcatgtttgtttacaacatctcctgccatttcttga |
15896178 |
T |
|
| Q |
612 |
aacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcc |
695 |
Q |
| |
|
|| || ||||||||||||||| ||| | ||| ||||||||||| | | | ||||||||||||||||||||||||| |||| |
|
|
| T |
15896179 |
aataggctccaagcttcatcctccgacaatacagggacttgaaaattcactctgcatcccatattttggcacactttttgatcc |
15896262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 174 - 349
Target Start/End: Complemental strand, 130419 - 130244
Alignment:
| Q |
174 |
acattgctgtccaacaacaagaactttcgtcttagatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatc |
273 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||||||| || ||||||| |||||||||||||||| || || | ||||||||||| |
|
|
| T |
130419 |
acattgctgtccaacaacaagaaacatctctttagatcgcccaccaaactacgcactcgatttcttgctttcaatggctcaccaacggctttgaacaatc |
130320 |
T |
|
| Q |
274 |
ccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataag |
349 |
Q |
| |
|
||||||| | |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
130319 |
ccaagcctattgcatgacgcaataaaatttcaataggaatatcaaagtcttctggaaataatccacaaagcataag |
130244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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