View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4997-Insertion-6 (Length: 631)

Name: NF4997-Insertion-6
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4997-Insertion-6
NF4997-Insertion-6
[»] chr3 (1 HSPs)
chr3 (8-631)||(44004801-44005432)


Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 631
Target Start/End: Complemental strand, 44005432 - 44004801
Alignment:
Q  8 cacccaccctattacaaaggattagactacatttatgaagaccgtggtgaggtaaacaaacaaacaccaaaagattatgaaaacaaaatagtttatatga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005432 cacccaccctattacaaaggattagactacatttatgaagaccgtggtgaggtaaacaaacaaacaccaaaagattatgaaaacaaaatagtttatatga 44005333  T
Q  108 ttagcgtttatctaactagaaatttcaaactgtatttgtaggtcttggatatgcgtatatttgaaacaggagagcatgcacttgtaagtaacttgtcaat 207  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005332 ttagtgtttatctaactagaaatgtcaaactgtatttgtaggtcttggatatgcgtatatttgaaacaggagagcatgcacttgtaagtaacttgtcaat 44005233  T
Q  208 annnnnnnnnnnnnnt------accaaaggcagctgacagcgtgccaattatggt-------aaaattgtgaagtatttgaagtttaagttttagtattc 294  Q
    |                     ||||||||||||||||||||||||||||||  |       || |   |||  ||||||||||||||||||||||||||    
T  44005232 agtgtgtgtgttttaggtgtgaaccaaaggcagctgacagcgtgccaattatttttcataccaacagcatga--tatttgaagtttaagttttagtattc 44005135  T
Q  295 taacacaaaaactgtactattgctcaattctcaggttgcatgggtaggagtccccactgctccagcttggcttcctacatacatgcttatcaaggtaatg 394  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005134 taacacaaaaactgtaccattgctcaattctcaggttgcatgggtaggagtccccactgctccagcttggcttcctacatacatgcttatcaaggtaatg 44005035  T
Q  395 cttaacttgttccaattaaatctgatgtaaattgcttaactttatctacatatacgtgacctattttcattttagttgctttgaaagcacccaagtccta 494  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44005034 cttaacttgttccaatgaaatctgatgtaaattgtttaactttatctacatatacgcgacctattttcattttagttgctttgaaagcacccaagtccta 44004935  T
Q  495 actcctacttttttgttgcagtcagagaagctcaattatgagaggctataaacactccnnnnnnnnctagtattgtaagatgcgagattcaagaaagatt 594  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||||||||| ||||||    
T  44004934 actcttacttttttgttgcagtcagagaagctcaattatgagaggctat-aacactcc-ttttcttctagtattgtaagatgcgagattcaag-aagatt 44004838  T
Q  595 gattcaaaataccatcagagacgcccaccatacccca 631  Q
    |||||||||||||||||||||||||||||||||||||    
T  44004837 gattcaaaataccatcagagacgcccaccatacccca 44004801  T

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