View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4997-Insertion-8 (Length: 310)
Name: NF4997-Insertion-8
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4997-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 3591404 - 3591702
Alignment:
| Q |
8 |
acaaagacatcaaaaacattgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttttgctatctttaaattagctagtgcttat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3591404 |
acaaagacatcaaaaacattgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttttgctatctttaaattagctagtgcttat |
3591503 |
T |
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| Q |
108 |
tgaatatcacaatcattttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3591504 |
tgaatatcacaatcattttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttt |
3591603 |
T |
|
| Q |
208 |
tgtgaatccattgaaatatttctgtggaaattactatggttatacataaattgcttcatcttcatcatcatttcactcttcatctcatggctccattca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3591604 |
tgtgaatccattgaaatatttctgtggaaattactatggttacacataaattgcttcatcttcatcatcatttcactcttcatctcatggctccattca |
3591702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 3577063 - 3577362
Alignment:
| Q |
8 |
acaaagacatcaaaaacattgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttttgctatctttaaattagctagtgcttat |
107 |
Q |
| |
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|||||||| |||||||| |||||||| || ||||||||||||| |||| ||||||||||| |||||||||||| |||||| || ||||||||||||||| |
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| T |
3577063 |
acaaagacctcaaaaactttgttttcgcaactcgtatcacaatcactaaactttttcttaatccttggtttttgttatcttcaacttagctagtgcttat |
3577162 |
T |
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| Q |
108 |
tgaatatcacaatcattttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3577163 |
tgaatatcacaatcattttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggctggttt |
3577262 |
T |
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| Q |
208 |
tgtgaatccattgaaatatttctgtggaaattactatggtta-tacataaattgcttcatcttcatcatcatttcactcttcatctcatggctccattca |
306 |
Q |
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||| ||||||||||||| || |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3577263 |
tgtaaatccattgaaattttgctgtggaagttactatggttaccacataaattgcttcatcttcatcatcgtttcactcttcatctcatggctccattca |
3577362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 3569352 - 3569593
Alignment:
| Q |
19 |
aaaaacattgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttt--tgctatctttaaattagctagtgcttattgaatatca |
116 |
Q |
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|||||| || ||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
3569352 |
aaaaacttttttttcgcagctcgtatcacaatcgctaacctttttcttaaaccttggttttgttataatctttaaattagctagtgcttattgaatatca |
3569451 |
T |
|
| Q |
117 |
caatcattttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatcc |
216 |
Q |
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||||||||||| |||| |||| ||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||| |||| |||||||||| |
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| T |
3569452 |
a------tttttgtataattcgtaacaagcggacctagccagtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggtcttgtgaatcc |
3569545 |
T |
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| Q |
217 |
attgaaatatttctgtggaaattactatggtta-tacataaattgctt |
263 |
Q |
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|||| ||| || |||||||| |||||||||||| ||||||||||||| |
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| T |
3569546 |
attggaattttgctgtggaagttactatggttaccacataaattgctt |
3569593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 3602227 - 3602310
Alignment:
| Q |
158 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac |
241 |
Q |
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||||||| |||||| |||| |||||| |||||| ||||||||||||||||||||||||||||| ||| || ||||||| |||| |
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| T |
3602227 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttgtgaatccattggaattttgttgtggaagttac |
3602310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 14341110 - 14341193
Alignment:
| Q |
158 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac |
241 |
Q |
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||||||| |||||| |||| |||||| |||||| ||||||||||||||||| ||||||||||| ||| || ||||||| |||| |
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| T |
14341110 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttatgaatccattggaattttgttgtggaagttac |
14341193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 1409847 - 1409904
Alignment:
| Q |
192 |
gatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattactatggtta |
249 |
Q |
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||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||| |
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| T |
1409847 |
gatttgtggcaggttttgtgaatccattggaattttgctgtggaagttactatggtta |
1409904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 1409747 - 1409809
Alignment:
| Q |
8 |
acaaagacatcaaaaacattgttttcacagctcgtatcacaattgctaacctttttcttaaac |
70 |
Q |
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|||||| |||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
1409747 |
acaaaggcatcaaaaactttgtttttgcagctcgtataacaatcgctaacctttttcttaaac |
1409809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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