View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4997-Insertion-9 (Length: 299)
Name: NF4997-Insertion-9
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4997-Insertion-9 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 30569067 - 30568786
Alignment:
| Q |
8 |
gaaactacatatataatcacatggtaaatataacttacatcattctagtagcagcatcgctgtcttttcatgtccgtatggcatcaccactgcgactgaa |
107 |
Q |
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| T |
30569067 |
gaaattacatatataatcacaaggtaaatataacttacatcattctagtagcagcatcgttgtcttttcatgtctgtatggcgtcaccactgcgactgaa |
30568968 |
T |
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| Q |
108 |
gatattcgtttcatgcagtttcatctctctaaagacagatctgcaatgaaataatgcaaatttcatctttaaacttatcaatgaatttgaaagatacaaa |
207 |
Q |
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| T |
30568967 |
gatatccgtatcatgcagtttcatctctctaaagacagatctgcaataaattaatgcaaatttcatctttaaacttatcaa------tgaaagatacaaa |
30568874 |
T |
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| Q |
208 |
aacattagataaattatggtagcaattaataaaggtaacaaacagatagaatcaccttctgcagcatataaggaggctgatttcgacatcca |
299 |
Q |
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| T |
30568873 |
aacattggataaattatggtagc----aataaaggtaacaaacatatagaatcaccttctgcaacatataaggaggttgatttcgacctcca |
30568786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 30572584 - 30572314
Alignment:
| Q |
8 |
gaaactacatatataatcacatggtaaatataacttacatcattctagtagcagcatcgctgtcttttcatgtccgtatggcatcaccactgcgactgaa |
107 |
Q |
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| T |
30572584 |
gaaactacatatttaatcacaaggtaagtaaaagttataccaatctagtagcagcatcgctgtcttttcatgtctgtatggcatcaccactgcgactgga |
30572485 |
T |
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| Q |
108 |
gatattcgtttcatgcagtttcatctctctaaagacagatctgcaatgaaataatgcaaatttcatctttaaacttatcaatgaatttgaaagatac-aa |
206 |
Q |
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| T |
30572484 |
gatattcgtatcatgaagtttcatctctctaaagacagatctgcaatgaaataatgcaaatttcatc---aa---------------tgaaagatacaaa |
30572403 |
T |
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| Q |
207 |
aaacattagataaattatggtagcaattaataaaggtaacaaacagatagaatcaccttctgcagcatataaggaggctgatttcgacatcca |
299 |
Q |
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| T |
30572402 |
aaacattagataaattatggtagc----aataaaggtaacaaacatatagaatcaccttctgcagcatataaggaggttgatttcgacctcca |
30572314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 30541748 - 30541690
Alignment:
| Q |
120 |
atgcagtttcatctctctaaagacagatctgcaatgaaataatgcaaatttcatcttta |
178 |
Q |
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| T |
30541748 |
atgcagtttcatctctctgaagacagaactgcaatgaaatgatgaaaatttcatcttta |
30541690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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