View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4997_high_1 (Length: 671)

Name: NF4997_high_1
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4997_high_1
NF4997_high_1
[»] chr4 (1 HSPs)
chr4 (19-670)||(28035290-28035941)


Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 19 - 670
Target Start/End: Original strand, 28035290 - 28035941
Alignment:
Q  19 ctcttgtccaagagtctcatttttaggaacacgtagcgcaacgaaacacaaaagaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagt 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035290 ctcttgtccaagagtctcatttttaggaacatgtagcgcaacgaaacacaaaagaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagt 28035389  T
Q  119 tgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtctcatgtagatagttatcagtctcagcaaatttgatgagagcttttgatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035390 tgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtctcatgtagatagttatcagtctcagcaaatttgatgagagcttttgatg 28035489  T
Q  219 cttccgtagaaatcaccggttctgtttcatcgagcaaattcaccaatggcgcagtgaatcttgtttcagttgctctaaaagtcatcgctaagttaccaat 318  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  28035490 cttccgtagaaatcaccggttctgtttcatcgagcaacttcaccaatggcgcaatgaatcttgtttcagttgctctaaaagtccttgctaagttaccaat 28035589  T
Q  319 agctttaacacaaggtatgagcaaatcctcggagtcacctttttcgacaactttgagaaactgttccaccacagcttttgcagcaggggcagttggtttg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035590 agctttaacacaaggtatgagcaaatcctcggagtcacctttttcaacaactttgagaaactgttccaccacagcttttgcagcaggggcagttggtttg 28035689  T
Q  419 aaagcagagcgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctgaataatgttgcacatcatctgtacccttttcca 518  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28035690 aaagcagaacgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctgaataatgttgcacatcatcagtacccttttcca 28035789  T
Q  519 acaaaaccgcgaaacacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttctacacaattgccataaagctctagctgccattgc 618  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035790 acaaaaccgcaaaacacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttctacacaattgccataaagctctagctgccattgc 28035889  T
Q  619 tttcatttgtgcctttgtttcaggatcttcaaattctctccctttgttactc 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28035890 tttcatttgtgcctttgtttcaggatcttcaaattctctccctttgatactc 28035941  T

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