View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4997_low_1 (Length: 671)

Name: NF4997_low_1
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4997_low_1
NF4997_low_1
[»] chr4 (1 HSPs)
chr4 (19-670)||(28035290-28035941)


Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 19 - 670
Target Start/End: Original strand, 28035290 - 28035941
Alignment:
Q  19 ctcttgtccaagagtctcatttttaggaacacgtagcgcaacgaaacacaaaagaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagt 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035290 ctcttgtccaagagtctcatttttaggaacatgtagcgcaacgaaacacaaaagaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagt 28035389  T
Q  119 tgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtctcatgtagatagttatcagtctcagcaaatttgatgagagcttttgatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035390 tgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtctcatgtagatagttatcagtctcagcaaatttgatgagagcttttgatg 28035489  T
Q  219 cttccgtagaaatcaccggttctgtttcatcgagcaaattcaccaatggcgcagtgaatcttgtttcagttgctctaaaagtcatcgctaagttaccaat 318  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  28035490 cttccgtagaaatcaccggttctgtttcatcgagcaacttcaccaatggcgcaatgaatcttgtttcagttgctctaaaagtccttgctaagttaccaat 28035589  T
Q  319 agctttaacacaaggtatgagcaaatcctcggagtcacctttttcgacaactttgagaaactgttccaccacagcttttgcagcaggggcagttggtttg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035590 agctttaacacaaggtatgagcaaatcctcggagtcacctttttcaacaactttgagaaactgttccaccacagcttttgcagcaggggcagttggtttg 28035689  T
Q  419 aaagcagagcgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctgaataatgttgcacatcatctgtacccttttcca 518  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28035690 aaagcagaacgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctgaataatgttgcacatcatcagtacccttttcca 28035789  T
Q  519 acaaaaccgcgaaacacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttctacacaattgccataaagctctagctgccattgc 618  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035790 acaaaaccgcaaaacacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttctacacaattgccataaagctctagctgccattgc 28035889  T
Q  619 tttcatttgtgcctttgtttcaggatcttcaaattctctccctttgttactc 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28035890 tttcatttgtgcctttgtttcaggatcttcaaattctctccctttgatactc 28035941  T

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