View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4997_low_6 (Length: 228)

Name: NF4997_low_6
Description: NF4997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4997_low_6
NF4997_low_6
[»] chr5 (1 HSPs)
chr5 (151-212)||(33578687-33578748)
[»] chr2 (7 HSPs)
chr2 (71-119)||(10488047-10488095)
chr2 (74-119)||(7476927-7476972)
chr2 (79-117)||(10506674-10506712)
chr2 (72-117)||(10462826-10462871)
chr2 (74-119)||(10492430-10492475)
chr2 (71-119)||(10518042-10518090)
chr2 (74-119)||(10473517-10473562)


Alignment Details
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 33578748 - 33578687
Alignment:
Q  151 gaagcttaacaagagtaaagatgcatctttgtcccaacgttcgcgatcaaaatggatcaaga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33578748 gaagcttaacaagagtaaagatgcatctttgtcccaacgttcgcaatcaaaatggatcaaga 33578687  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 10488047 - 10488095
Alignment:
Q  71 aagtataaagaatattatgtctcaaattaggagtccaaagatcccttaa 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10488047 aagtataaagaatattaggtctcaaattaggagtccaaagatcccttaa 10488095  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 7476972 - 7476927
Alignment:
Q  74 tataaagaatattatgtctcaaattaggagtccaaagatcccttaa 119  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  7476972 tataaagaatattatgtctcaaattaggagtccaaatatcccttaa 7476927  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 10506674 - 10506712
Alignment:
Q  79 agaatattatgtctcaaattaggagtccaaagatccctt 117  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10506674 agaatattatgtctcaaattaggagtccaaagatccctt 10506712  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 10462826 - 10462871
Alignment:
Q  72 agtataaagaatattatgtctcaaattaggagtccaaagatccctt 117  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||    
T  10462826 agtataaagaatattatgtcttatattaggagtccaaagatccctt 10462871  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 10492430 - 10492475
Alignment:
Q  74 tataaagaatattatgtctcaaattaggagtccaaagatcccttaa 119  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||    
T  10492430 tataatgaatattatgtctcaaattaggagtccaaagatcacttaa 10492475  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 10518042 - 10518090
Alignment:
Q  71 aagtataaagaatattatgtctcaaattaggagtccaaagatcccttaa 119  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  10518042 aagtgtaaagtatattatgtctcaagttaggagtccaaagatcccttaa 10518090  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 10473517 - 10473562
Alignment:
Q  74 tataaagaatattatgtctcaaattaggagtccaaagatcccttaa 119  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||    
T  10473517 tataaagaatataatgtttcagattaggagtccaaagatcccttaa 10473562  T

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