View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4998-Insertion-1 (Length: 213)
Name: NF4998-Insertion-1
Description: NF4998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4998-Insertion-1 |
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| [»] scaffold2034 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 2047989 - 2048123
Alignment:
| Q |
78 |
gcagaaaccagtgaaaaagggttcgtatccattacaccctggtgtgcaaggttttttcatcacttgcgatggcggaagagaacaccaagctactcgcgaa |
177 |
Q |
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| T |
2047989 |
gcagaaaccagtgaaaaagggttcgtatccattacaccctggtgtgcaaggttttttcatcacttgcgatggcggaagagaacaccaagctactcgcgaa |
2048088 |
T |
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| Q |
178 |
gctctcaatattctcgataacgtatcatttcatcc |
212 |
Q |
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| T |
2048089 |
gctctcaatattctcgataacgtatcatttcatcc |
2048123 |
T |
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Target: scaffold2034 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold2034
Description:
Target: scaffold2034; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 564 - 662
Alignment:
| Q |
78 |
gcagaaaccagtgaaaaagggttcgtatccattacaccctggtgtgcaaggttttttcatcacttgcgatggcggaagagaacaccaagctactcgcga |
176 |
Q |
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| T |
564 |
gcagaaaccagtgaaaaagggttcgtttacattaaaccccggtgtgcaaggttttttcatcacttgcgatggtggaagagaacaccaagccactcgcga |
662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 16290445 - 16290506
Alignment:
| Q |
82 |
aaaccagtgaaaaagggttcgtatccattacaccctggtgtgcaaggttttttcatcacttg |
143 |
Q |
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| T |
16290445 |
aaacaagtgaaaaagggttcgtttccattaaactctggtatgcaagattttttcatcacttg |
16290506 |
T |
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