View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4998-Insertion-2 (Length: 586)
Name: NF4998-Insertion-2
Description: NF4998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4998-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 422
Target Start/End: Original strand, 21215145 - 21215559
Alignment:
| Q |
8 |
gcatttacacgtactggtttcatggcaaacatcgaacacctcttgggaaatttaagatttgcattctttttctttctaaaattctactatattaatagac |
107 |
Q |
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| T |
21215145 |
gcatttacatgtactggtttcatgtcaaacattgaacacctcgtaggaaatttatgatttgctttctttttctatctaaaattctactatattattagac |
21215244 |
T |
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| Q |
108 |
ttacatgatctattatctttagcttactgcgttgttgctgtggagtcttttgatcgccatattgctatggcctttcttgatcgcatcaaggaggatttta |
207 |
Q |
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| T |
21215245 |
ttacatgatctattatctttagcttactgcgttgttggtgtggagtcttttgatcgccatattgctatggcatttcttgatcgcatcaaggaggatttta |
21215344 |
T |
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| Q |
208 |
ccaaaagatatggtggaggaaaagctgcaacggcaacatctaaaagcttgaataaagaatttgggtactctagtttataacaattttgtgtatagaaaat |
307 |
Q |
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| T |
21215345 |
ccaaaagatatggtggaggaaaagctgcaacagcaacatctaaaagcttgaataaagaatttgggtactcaagtttataacaattttgtgtatagaaaat |
21215444 |
T |
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| Q |
308 |
gtgtctcaaaatttgaattgcattaattaacaagaaatttttgttgtatatatgcatggtttagaccgaaattgaaggagcatatggaatattgtgtgga |
407 |
Q |
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| T |
21215445 |
gtgtctcaaaagttgaattgcattaattaacaagaaatttttgttgtatatatgcatggtttagaccgaaattgaaggagcatatgcaatattgtgtgga |
21215544 |
T |
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| Q |
408 |
acatccagaggaggt |
422 |
Q |
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| T |
21215545 |
acatccagaagaggt |
21215559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 7536190 - 7536042
Alignment:
| Q |
128 |
agcttactgcgttgttgctgtggagtcttttgatcgccatattgctatggcctttcttgatcgcatcaaggaggattttaccaaaagatatggtggagga |
227 |
Q |
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| T |
7536190 |
agcttactgtgttgttgcagtggagtctgttggtagacaaattccaatagcttttcttgaacgtattaaggatgattttaataaaagatatggtggagga |
7536091 |
T |
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| Q |
228 |
aaagctgcaacggcaacatctaaaagcttgaataaagaatttgggtact |
276 |
Q |
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| T |
7536090 |
agagctacaacagcaactgctaaaagtcttaacaaagaatttgggtact |
7536042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 7490096 - 7489948
Alignment:
| Q |
128 |
agcttactgcgttgttgctgtggagtcttttgatcgccatattgctatggcctttcttgatcgcatcaaggaggattttaccaaaagatatggtggagga |
227 |
Q |
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| T |
7490096 |
agcttactgtgttgttgcagtggagtctgttggtagacaaattccaatagcttttcttgaacgtattaaagatgattttaataaaaaatatggtggagga |
7489997 |
T |
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| Q |
228 |
aaagctgcaacggcaacatctaaaagcttgaataaagaatttgggtact |
276 |
Q |
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| T |
7489996 |
agagctacaacagcaactgctaaaagtcttaacaaagaatttgggtact |
7489948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 7535966 - 7535911
Alignment:
| Q |
367 |
tttagaccgaaattgaaggagcatatggaatattgtgtggaacatccagaggaggt |
422 |
Q |
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|||||||| || ||||||||||| ||| ||||||||||||||||||| |||||||| |
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| T |
7535966 |
tttagaccaaagttgaaggagcaaatgcaatattgtgtggaacatccggaggaggt |
7535911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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