View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4998_high_1 (Length: 468)
Name: NF4998_high_1
Description: NF4998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4998_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 6 - 452
Target Start/End: Complemental strand, 53515417 - 53514971
Alignment:
| Q |
6 |
gtgagatgaataacaaggttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgat |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53515417 |
gtgagaagaataacaaggttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgat |
53515318 |
T |
|
| Q |
106 |
tttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53515317 |
tttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctg |
53515218 |
T |
|
| Q |
206 |
tcatctgttccaagagcttccatgtatcacaattttctggtctgttttagaatatacataagatagtagaagtgaaaattaatatgagaggatgagagga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53515217 |
tcatctgttccaagagcttccatgtatcacaattttctggtctgttttagaatatacataagatagtagaagtgaaaattaatatgagagtatgagagga |
53515118 |
T |
|
| Q |
306 |
caccgattttaaacctaaatttatatgagaatacataagacagttgaagagaaaattaatctaacatgtatcataatatagttcttcaagtattgaatag |
405 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53515117 |
caccgattttaaacctaactttatatgagaatacataagacagttgaagagaaaattaatctaacatgtatcacaatatagttcttcaagtattgaatag |
53515018 |
T |
|
| Q |
406 |
agagctgcatataattgtacctgtaatgtctgtaagcataggctagg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53515017 |
agagctgcatataattgtacctgtaatgtctgtaagcataggctagg |
53514971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 61 - 383
Target Start/End: Complemental strand, 53526199 - 53525878
Alignment:
| Q |
61 |
aaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatg |
160 |
Q |
| |
|
|||||||||||||||| || || |||||||| |||||| ||||||||||||||||||| ||| || ||||| | || |||| ||||||||| ||||||| |
|
|
| T |
53526199 |
aaggaaggatgaaaacttcgtagagtgagtgatattctatttgattttgatttgaaatatgtttattctttcatgttttgtgattgttgcccccggaatt |
53526100 |
T |
|
| Q |
161 |
catttcagtttgacggaaaggaaggatcaatggactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggtctgttttagaatat |
260 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
53526099 |
tgtttcagtttgtcggaaaggaaggatcagtggactgaagttctttcatcggagccaagagcttccatgtatcacaattttctggtcagttttaga--tt |
53526002 |
T |
|
| Q |
261 |
acataagatagtagaagtgaaaattaatatgagaggatgagaggacaccga-ttttaaacctaaatttatatgagaatacataagacagttgaagagaaa |
359 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||| | | | |||| |||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
53526001 |
acataagatagttgaagagaaaattaatatgagaggatgtaaggaaaacaatttttgaacctaaatttagatgagaatacataagatagttgaagagaaa |
53525902 |
T |
|
| Q |
360 |
attaatctaacatgtatcataata |
383 |
Q |
| |
|
||||||||||||| ||||| |||| |
|
|
| T |
53525901 |
attaatctaacatttatcacaata |
53525878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 53526670 - 53526541
Alignment:
| Q |
54 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctc |
153 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| || ||||| | || |||| ||||||||||| |
|
|
| T |
53526670 |
tgacggaacggaaggatgaaaacttcatagagtgagtggtattctgattgattttgatttgaaatgtgtttattctttcatgttttgtgattgttgcctc |
53526571 |
T |
|
| Q |
154 |
cggaatgcatttcagtttgacggaaaggaa |
183 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
53526570 |
tggaatttgtttcagtttgacggaaaggaa |
53526541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 53526433 - 53526306
Alignment:
| Q |
56 |
acggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccg |
155 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||||| | || || | ||||||||||| | |
|
|
| T |
53526433 |
acggaaaggaaggatgaaaactacatagagtgagtggtattttgtttgattttgatttgaaatgtgtttaatctttcatgttttttgattgttgcctctg |
53526334 |
T |
|
| Q |
156 |
gaatgcatttcagtttgacggaaaggaa |
183 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
53526333 |
gaatctgtttcagtttgacggaaaggaa |
53526306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 53526553 - 53526419
Alignment:
| Q |
54 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcct |
152 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||| | || ||||| |
|
|
| T |
53526553 |
tgacggaaaggaatgataaaaacttcatagagtgagtggttattctatttgattttgatttgaaatgtgtttaatctttcgtgttttgtgactgctgcct |
53526454 |
T |
|
| Q |
153 |
ccggaatgcatttcagtttgacggaaaggaaggat |
187 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
53526453 |
ctggaattcatttcagtttaacggaaaggaaggat |
53526419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 53526778 - 53526654
Alignment:
| Q |
63 |
ggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgca |
162 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||| | | ||| |||| |||| ||| ||| | |
|
|
| T |
53526778 |
ggaaggataaaaacttcatagagtgagtggtattctgtttgattttgatttcaaatgtgtttaatctttcatgatgtgtgattgctgcccccgaaattcg |
53526679 |
T |
|
| Q |
163 |
tttcagtttgacggaaaggaaggat |
187 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
53526678 |
tttcagtttgacggaacggaaggat |
53526654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 452
Target Start/End: Complemental strand, 53511337 - 53511270
Alignment:
| Q |
385 |
agttcttcaagtattgaatagagagctgcatataattgtacctgtaatgtctgtaagcataggctagg |
452 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
53511337 |
agttcttcaagtattgaatagagttctgcatacaattgcacttgtaatgtctgtaagcataggctagg |
53511270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 53526318 - 53526240
Alignment:
| Q |
54 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttt |
131 |
Q |
| |
|
||||||||||||| | | ||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53526318 |
tgacggaaaggaatgctaaaaacttcatagagtgagtggttattctgtttgattttgatttgaaatgtgtttaatcttt |
53526240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 246
Target Start/End: Complemental strand, 53550245 - 53550092
Alignment:
| Q |
93 |
tattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatg |
192 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||| ||| | || |||| | || ||| || ||||| ||||||| || |||||| |||||| || || |
|
|
| T |
53550245 |
tattctgtttgattctgatttggaatgtgtttaatttttcatgttttgtgactgctgcttctggaattggtttcagtctggcggaaaagaaggagcagtg |
53550146 |
T |
|
| Q |
193 |
gactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggt |
246 |
Q |
| |
|
|||||||||||| |||| | |||||||||| | | |||||||||||| |||| |
|
|
| T |
53550145 |
gactgaaattctttcatgggagccaagagctttcgtctatcacaattttttggt |
53550092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 16607976 - 16608062
Alignment:
| Q |
215 |
ccaagagcttccatgtatcacaattttctggtctgttttagaatatacataagatagtagaagtgaaaattaatatgagaggatgagag |
303 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||| |||||||| |||||||||||||| |||| |||||||||||| | ||||| |||| |
|
|
| T |
16607976 |
ccaagagcatccatctatcaccattttctggttggttttaga--atacataagatagtggaagagaaaattaatattaaaggataagag |
16608062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University