View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4998_low_1 (Length: 913)
Name: NF4998_low_1
Description: NF4998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4998_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 303 - 872
Target Start/End: Original strand, 33654470 - 33655039
Alignment:
| Q |
303 |
ggaatcatttgaaactactcgagttttagtgacgccttcttcatggtggttaaactcatttgaccttccattctcatacttcttggtcatagtatattct |
402 |
Q |
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| T |
33654470 |
ggaatcatttgaaactactcgagttttagtgacgccttcttcatggtggttaaactcatttgaccttccattctcatacttcttggtcatagtatattct |
33654569 |
T |
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| Q |
403 |
tcctgaaacttcattggctgtttttctatatcatgagtagaatcatcatcgtctatcaaaagaagattctggaaagcatcccagttgttatcacctttta |
502 |
Q |
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| T |
33654570 |
tcctgaaacctcattggctgtttttctatatcatgagtagaatcatcatcgtctatcaaaagaagattctggaaagcatcccagttgttatcacctttta |
33654669 |
T |
|
| Q |
503 |
tgccgttggaatcagcattccttgaaccatttagcatgtcatggggctttgcgctatgttgtttcttatgctgacgagaggttgacctgtttcttttatc |
602 |
Q |
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| T |
33654670 |
tgccgatggaatcagcattccttgaaccatttagcatgtcatggggctttgcgctatgttgtttcttatgctgacgagaggttggcctgtttcttttctc |
33654769 |
T |
|
| Q |
603 |
cagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactcccttcagtgatactacctttttct |
702 |
Q |
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| T |
33654770 |
cagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactcccttcagtgatactacctttttct |
33654869 |
T |
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| Q |
703 |
ccgtctccattggaagttatatagtttatgttacggataactaccttccttgacgatttctttccatgtttcttgttgcttcgctttgaattgtcatctg |
802 |
Q |
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| T |
33654870 |
ccgtctcccttggaagttatatagtttatgttacggataactactttccttgacgacttctttccatgtttcttgttgcttcgctttgaattgtcatctg |
33654969 |
T |
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| Q |
803 |
aatcactctcataagtagactcagaggatgcagttgactcgtcttcttcagagtgatccaatacctgaga |
872 |
Q |
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| T |
33654970 |
aatcactctcataagtagactcagaggatgcagttgactcgtcttcttcagagtgatccaatacctgaga |
33655039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 33654225 - 33654467
Alignment:
| Q |
19 |
atatcagaagctgtttgagaattaaattgatattgcgatggtcgatcttgaatcatgaaagagtcgtcagctaaaatgcctttcttgtttttctctacag |
118 |
Q |
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| T |
33654225 |
atatcaggagctgtttgagaattaaattgatattgcgatggtcgatcttgaatcatgaaagagtcgtcagctaaaatgcctttcttgtttttctctacag |
33654324 |
T |
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| Q |
119 |
gtaaataatctctagctgaggatgacacataatagctacccgattcattgtttctctgagataacaacaattcctcgttggtaattttctttgtctgcat |
218 |
Q |
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| T |
33654325 |
gtaaataatctctagctgaagatgacacataatagctacccgattcattgtttctctgagataacaacaattcctcgttggtaattttctttgtctgcat |
33654424 |
T |
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| Q |
219 |
gaatgtagatccatccttcccttcgttgaaatattcaacacga |
261 |
Q |
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| T |
33654425 |
gaatgtagatccatccttcccttcgttgaaatattcaacacga |
33654467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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