View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4998_low_3 (Length: 366)
Name: NF4998_low_3
Description: NF4998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4998_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 33655416 - 33655067
Alignment:
| Q |
7 |
aataaatactactaaactaccaataaaaccctcttgcatcaatatcttatacagttagctccagaagtttgttactcttattgattttgaaaattgcaga |
106 |
Q |
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|||| ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33655416 |
aatagatactactaaattaccaataaaaccctcctgcatcaatatcttgtacagttagctccagaagtttgttactcttattgattttgaaaattgcaga |
33655317 |
T |
|
| Q |
107 |
ttatagcttgccagcatcagttcaaacaccatcatccgatggaagggctcaaatgccgaggtcatggccgaaccatcatccacactacattcacaatttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33655316 |
ttatagcttgccagcatcagttcaaacaccatcatccgatggaagggctcaaatgctgaggtcatggccgaaccatcatccacagtacattcacaatttt |
33655217 |
T |
|
| Q |
207 |
cagggtcatggatttcaacaaacacctccataccaaggatacatgtatcctggtatgcaggttccgtctccgtattatcctgggaatatgcaatggcctc |
306 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33655216 |
cagggtcatgcatttcaacaaacgcctccataccaaggatacatgtatcctggtatgcaggttccgtctccgtattatcctgggaatatgcaatggcctc |
33655117 |
T |
|
| Q |
307 |
caaacggggatcgctctcacatcgttcatgaccaagaaatggattctcat |
356 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33655116 |
caaacggggatcgctctcacattgttcatgaccaagaaatggattctcat |
33655067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 24730860 - 24730815
Alignment:
| Q |
8 |
ataaatactactaaactaccaataaaaccctcttgcatcaatatct |
53 |
Q |
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||||||||||||||| ||| |||||||||||| ||||||| ||||| |
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|
| T |
24730860 |
ataaatactactaaattactaataaaaccctcctgcatcactatct |
24730815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 43306971 - 43307012
Alignment:
| Q |
7 |
aataaatactactaaactaccaataaaaccctcttgcatcaa |
48 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| |||||||| |
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|
| T |
43306971 |
aataaatactactaaattactaataaaaccctcctgcatcaa |
43307012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 53012818 - 53012778
Alignment:
| Q |
7 |
aataaatactactaaactaccaataaaaccctcttgcatca |
47 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||| |
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|
| T |
53012818 |
aataaatactactaaattactaataaaaccctcctgcatca |
53012778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 13882982 - 13883022
Alignment:
| Q |
7 |
aataaatactactaaactaccaataaaaccctcttgcatca |
47 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||| |
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|
| T |
13882982 |
aataaatactactaaattactaataaaaccctcctgcatca |
13883022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 29341088 - 29341132
Alignment:
| Q |
4 |
aaaaataaatactactaaactaccaataaaaccctcttgcatcaa |
48 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| | |||||| |
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|
| T |
29341088 |
aaaaataaatactactaaattactaataaaaccctcctacatcaa |
29341132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 31915378 - 31915338
Alignment:
| Q |
7 |
aataaatactactaaactaccaataaaaccctcttgcatca |
47 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||| |
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|
| T |
31915378 |
aataaatactactaaattactaataaaaccctcatgcatca |
31915338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 50857743 - 50857783
Alignment:
| Q |
7 |
aataaatactactaaactaccaataaaaccctcttgcatca |
47 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||| |
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|
| T |
50857743 |
aataaatactactaaattactaataaaaccctcctgcatca |
50857783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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