View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4998_low_7 (Length: 249)

Name: NF4998_low_7
Description: NF4998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4998_low_7
NF4998_low_7
[»] chr1 (5 HSPs)
chr1 (1-240)||(29443589-29443828)
chr1 (8-237)||(29453579-29453799)
chr1 (117-240)||(29422938-29423052)
chr1 (8-223)||(29468055-29468276)
chr1 (2-89)||(29423051-29423138)
[»] chr2 (20 HSPs)
chr2 (105-240)||(12012927-12013054)
chr2 (46-186)||(10371511-10371648)
chr2 (105-240)||(11987865-11987992)
chr2 (62-186)||(9284540-9284665)
chr2 (62-186)||(9294990-9295115)
chr2 (92-186)||(9315691-9315784)
chr2 (46-160)||(10347462-10347575)
chr2 (92-186)||(9328262-9328355)
chr2 (105-240)||(12019266-12019391)
chr2 (92-240)||(9320596-9320736)
chr2 (61-240)||(9364242-9364409)
chr2 (186-240)||(9291563-9291617)
chr2 (105-142)||(12006496-12006533)
chr2 (44-135)||(9065937-9066035)
chr2 (92-186)||(9061545-9061636)
chr2 (46-133)||(10335584-10335670)
chr2 (186-240)||(12006544-12006598)
chr2 (130-240)||(8573931-8574035)
chr2 (186-240)||(10352735-10352789)
chr2 (191-240)||(9066089-9066138)
[»] chr3 (1 HSPs)
chr3 (123-240)||(37462095-37462205)
[»] scaffold0667 (1 HSPs)
scaffold0667 (94-186)||(4117-4208)
[»] chr8 (1 HSPs)
chr8 (59-186)||(41967067-41967192)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 29443589 - 29443828
Alignment:
Q  1 tgccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443589 tgccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttt 29443688  T
Q  101 tctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443689 tctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcata 29443788  T
Q  201 ggacaattattctctaattattttgaagtctctacctttg 240  Q
    ||||||  ||||||||||||||||||||||||||||||||    
T  29443789 ggacaaggattctctaattattttgaagtctctacctttg 29443828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 29453579 - 29453799
Alignment:
Q  8 atttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgt 107  Q
    |||||||||||||||||||| | |||||| ||||||||||| |||||| | ||||||||||||||||||| |||||| |||| |||||||||| || |||    
T  29453579 atttgtgttggaagtcttgtgccaccttccttccccaggaaagagaattatacaagcaagagaaggtactccttatttattatctgagtttttgctctgt 29453678  T
Q  108 ataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaat 207  Q
    |||||||||| ||| |||||| || ||||||||||||||||  |||||||||  ||||||||||   ||||       ||||||||||| |||| ||||     
T  29453679 ataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag--taaat-------tgaattcttattatagaacaag 29453769  T
Q  208 tattctctaattattttgaagtctctacct 237  Q
     |||||||||||| ||||||||||||||||    
T  29453770 gattctctaattactttgaagtctctacct 29453799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 29423052 - 29422938
Alignment:
Q  117 tatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctcta 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||       ||||||||||| ||| |||||| ||||||||    
T  29423052 tatcaattcaatggaccgatcatatgatatatctagttaaactc--tgttaaaaggtcaaat-------tgaattcttattatatgacaatgattctcta 29422962  T
Q  217 attattttgaagtctctacctttg 240  Q
    ||||||||||||||||||||||||    
T  29422961 attattttgaagtctctacctttg 29422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 29468055 - 29468276
Alignment:
Q  8 atttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagtttttt------ 101  Q
    |||||||||||||||||||||| |||||| ||||| ||||| |||||||  ||||||||||||||||||||||||||||||  |||||||||||          
T  29468055 atttgtgttggaagtcttgtaccaccttccttccctaggaacgagaatcgcacaagcaagagaaggtacttcttattgattgtctgagttttttgagttt 29468154  T
Q  102 ---ctttgtataagttaatatca-attcaatggacccatc-----atatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattc 192  Q
        | ||||||||||||||||| | | |||||||| |||     |||||||||||  ||||||||||  ||||||||||||||||       |||||||    
T  29468155 ttgttatgtataagttaatatcacagttaatggacctatcatatgatatgatatatgcagttaaactc--tgttaaaaggtcaaat-------tgaattc 29468245  T
Q  193 ttatcataggacaattattctctaattattt 223  Q
    |||| |||||||||| |||||||||||||||    
T  29468246 ttattataggacaatgattctctaattattt 29468276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 29423138 - 29423051
Alignment:
Q  2 gccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgatta 89  Q
    ||||| |||||||||||||||||||||  |||||| ||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  29423138 gccatgatttgtgttggaagtcttgtatcaccttccttccctaggaaggagaatcgcacaagcaagagaaggtacttcttattgatta 29423051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 12012927 - 12013054
Alignment:
Q  105 tgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggac 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||       ||||||||||| |||||||    
T  12012927 tgtataagttaatatcaattcaatggacccatcatatgatatatgtagttagactccatgtt-aaaggtcaaat-------tgaattcttattataggac 12013018  T
Q  205 aattattctctaattattttgaagtctctacctttg 240  Q
    ||  |||||||||||| |||||||||||||||||||    
T  12013019 aaggattctctaattactttgaagtctctacctttg 12013054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 10371648 - 10371511
Alignment:
Q  46 gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgata 145  Q
    |||||||||||| |||||||||||||||||||| || ||  ||| ||||||||||  | ||||||||||||||||| ||||||||| ||||||||| |||    
T  10371648 gaaggagaatcatacaagcaagagaaggtacttattgtt--ttaactgagtttttgttgtgtataagttaatatcagttcaatggatccatcatattata 10371551  T
Q  146 tatctagttaaactccatgttaaaaggtcaaattgaattct 186  Q
    |||  ||||||||||  |||| |||||||||||||||||||    
T  10371550 tatgcagttaaactctgtgtt-aaaggtcaaattgaattct 10371511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 11987865 - 11987992
Alignment:
Q  105 tgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggac 204  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  ||||| |||||||||||       ||||||| ||| |||||||    
T  11987865 tgtataagttaatatcaattcaatggacccatcatgtgatatatgtagttaaactttatgtt-aaaggtcaaat-------tgaattcctattataggac 11987956  T
Q  205 aattattctctaattattttgaagtctctacctttg 240  Q
    ||  ||| |||||||| |||||||||||||||||||    
T  11987957 aaggattttctaattactttgaagtctctacctttg 11987992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 9284540 - 9284665
Alignment:
Q  62 agcaagagaaggtacttctt-attgattacctgagtttttt-ctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaact 159  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | | || |||||||||||||||| || ||| ||||||||||    
T  9284540 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtagttaaact 9284639  T
Q  160 ccatgttaaaaggtcaaattgaattct 186  Q
      || || |||||||||||||||||||    
T  9284640 ttatatt-aaaggtcaaattgaattct 9284665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 9294990 - 9295115
Alignment:
Q  62 agcaagagaaggtacttctt-attgattacctgagtttttt-ctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaact 159  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | | || |||||||||||||||| || ||| | ||||||||    
T  9294990 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtggttaaact 9295089  T
Q  160 ccatgttaaaaggtcaaattgaattct 186  Q
    | ||| | |||||||||||||||||||    
T  9295090 ctatgct-aaaggtcaaattgaattct 9295115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 9315784 - 9315691
Alignment:
Q  92 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 186  Q
    ||||||||| || ||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||| ||| | |||||||||||||||||||    
T  9315784 tgagtttttgctatgtataagttaatgtcagttcaatggacccatcatatgatataagtagttaaactctatgct-aaaggtcaaattgaattct 9315691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 10347575 - 10347462
Alignment:
Q  46 gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgata 145  Q
    ||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||  | |||||||||| |||||| ||||||||||  ||||||| |||    
T  10347575 gaaggagaatcatccaagcaagagaaggtacttcttattgtttaactgagtttttgttgtgtataagtt-atatcagttcaatggacttatcatatcata 10347477  T
Q  146 tatctagttaaactc 160  Q
    |||  ||||||||||    
T  10347476 tatgcagttaaactc 10347462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 9328355 - 9328262
Alignment:
Q  92 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 186  Q
    ||||||||| || |||||||||| || |||||||||||||||| |||||||||||||  |||||||||| ||| | |||||||||||||||||||    
T  9328355 tgagtttttgctatgtataagttgatgtcaattcaatggacccgtcatatgatatatgaagttaaactctatgct-aaaggtcaaattgaattct 9328262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 12019266 - 12019391
Alignment:
Q  105 tgtataagttaatatc-aattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcatagga 203  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||||          || |||  |||||||||| ||||||    
T  12019266 tgtataagttaacatccaattcaatggacccatcatatgatatatgtagttaaactctatgttaa----------tgtatt-ggaattcttattatagga 12019354  T
Q  204 caattattctctaattattttgaagtctctacctttg 240  Q
    |||  |||||||||||| |||||||||||||||||||    
T  12019355 caaggattctctaattactttgaagtctctacctttg 12019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 240
Target Start/End: Complemental strand, 9320736 - 9320596
Alignment:
Q  92 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaatt 191  Q
    ||||||||| || ||||| |||| || ||||||||||||||||||||||||||||||  |||||||||| ||| | | |||||||||       ||||||    
T  9320736 tgagtttttgctatgtattagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgct-ataggtcaaat-------tgaatt 9320645  T
Q  192 cttatcataggacaattattctctaattattttgaagtctctacctttg 240  Q
     |||| || ||||||  || ||||||||| |||||||||||||||||||    
T  9320644 tttattatcggacaaggatactctaattactttgaagtctctacctttg 9320596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 9364409 - 9364242
Alignment:
Q  61 aagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactc 160  Q
    |||||||||||||||||| || || ||   |||||| ||| || |||||||| || ||||  ||||||| |||||||||||||||||| || ||||||||    
T  9364409 aagcaagagaaggtacttgttgtttat---ctgagtctttgctgtgtataagcta-tatccgttcaatgaacccatcatatgatatatgtacttaaactc 9364314  T
Q  161 catgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattattttgaagtctctacctttg 240  Q
     || || |||||||||||        |||||||||| |||||||||  | |||||||||| |||||||||| ||||||||    
T  9364313 tatatt-aaaggtcaaat-------ggaattcttattataggacaaggagtctctaattactttgaagtctatacctttg 9364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 9291617 - 9291563
Alignment:
Q  186 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttg 240  Q
    ||||||||||| |||||||||  |||||||||||| |||||||||||||||||||    
T  9291617 tgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 9291563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 12006496 - 12006533
Alignment:
Q  105 tgtataagttaatatcaattcaatggacccatcatatg 142  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12006496 tgtataagttaatatcaattcaatggacccatcatatg 12006533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 9065937 - 9066035
Alignment:
Q  44 aggaaggagaatcaaacaagcaagagaaggtacttcttattgattacc-------tgagttttttctttgtataagttaatatcaattcaatggaccca 135  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||  |       |||||| || ||||||| |||||||||||| |||||||||||||    
T  9065937 aggaaggagaatcgaacaaccaagagaaggtacttcttatttattttctaagttttgagttcttgctttgtacaagttaatatcagttcaatggaccca 9066035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 9061545 - 9061636
Alignment:
Q  92 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 186  Q
    ||||||||| || |||||||||| || ||| ||||||||  ||||||||| |||||| ||||||||||| ||| | |||||| ||||||||||||    
T  9061545 tgagtttttgctatgtataagttgatgtcagttcaatgg--ccatcatataatatatgtagttaaactctatgct-aaaggttaaattgaattct 9061636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 10335670 - 10335584
Alignment:
Q  46 gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacc 133  Q
    |||| ||||||  ||||||||| ||||||||||||||||| ||  ||||||||||  | |||||||||| |||||| |||||||||||    
T  10335670 gaagcagaatcgtacaagcaagggaaggtacttcttattgtttgactgagtttttgttgtgtataagtt-atatcagttcaatggacc 10335584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 12006544 - 12006598
Alignment:
Q  186 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttg 240  Q
    |||||||||||  ||||||||  |||||||||||| |||||||||||||||||||    
T  12006544 tgaattcttattttaggacaaggattctctaattactttgaagtctctacctttg 12006598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 8573931 - 8574035
Alignment:
Q  130 gacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattattttgaagt 229  Q
    ||||||||||||||||||| | ||||||||| ||| | |||||||||||| |||||| |     |  ||||||||||  |||||||||||| ||||||||    
T  8573931 gacccatcatatgatatatgtggttaaactctatgct-aaaggtcaaattaaattctta-----tcacataggacaaggattctctaattactttgaagt 8574024  T
Q  230 ctctacctttg 240  Q
     | ||||||||    
T  8574025 ttatacctttg 8574035  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 10352789 - 10352735
Alignment:
Q  186 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttg 240  Q
    |||||||||||||||||| ||  |||||||||||| ||||| |||| ||||||||    
T  10352789 tgaattcttatcataggataaggattctctaattactttgacgtctttacctttg 10352735  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 9066089 - 9066138
Alignment:
Q  191 tcttatcataggacaattattctctaattattttgaagtctctacctttg 240  Q
    ||||||||||||| ||  |||||||||||| |||||||| ||||||||||    
T  9066089 tcttatcataggataaagattctctaattactttgaagtttctacctttg 9066138  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 37462205 - 37462095
Alignment:
Q  123 ttcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattatt 222  Q
    |||| ||||||||||||||||||||| |||||||  || ||| |||||||||||||||||       ||||| | |||||||||  |||||||||||| |    
T  37462205 ttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaa-------ttcttgttataggacaaggattctctaattact 37462113  T
Q  223 ttgaagtctctacctttg 240  Q
    ||||||||||||||||||    
T  37462112 ttgaagtctctacctttg 37462095  T

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Target: scaffold0667 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 4208 - 4117
Alignment:
Q  94 agttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 186  Q
    ||||||| || ||||||||||||||||  |||||||||||||||||||||| ||| |||||||||||  || |||||  ||||||||||||||    
T  4208 agtttttgctgtgtataagttaatatctgttcaatggacccatcatatgatttatttagttaaactctgtgctaaaa-ctcaaattgaattct 4117  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 41967067 - 41967192
Alignment:
Q  59 acaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaac 158  Q
    ||||||||||||||||||||||| || |||| || || |||| ||||||||| ||| | || | | ||||||||||||||||  ||| || || ||||||    
T  41967067 acaagcaagagaaggtacttcttgttcattatcttagcttttgctttgtatatgtt-agattagtgcaatggacccatcatacaatacatgtacttaaac 41967165  T
Q  159 tccatgttaaaaggtcaaattgaattct 186  Q
    || ||||| |||||| ||||||||||||    
T  41967166 tctatgtt-aaaggttaaattgaattct 41967192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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