View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4999-Insertion-1 (Length: 757)

Name: NF4999-Insertion-1
Description: NF4999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4999-Insertion-1
NF4999-Insertion-1
[»] chr4 (1 HSPs)
chr4 (8-757)||(24185433-24186176)


Alignment Details
Target: chr4 (Bit Score: 703; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 8 - 757
Target Start/End: Original strand, 24185433 - 24186176
Alignment:
Q  8 gtagttaccaagaaaataggcacaaacaatgttatatctaaccatgcaggataatgttgtcaatgtaaattataaaggaagaattttctatgttttacat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24185433 gtagttaccaagaaaataggcacaaacaatgttatatctaaccatgcaggataatgttgtcaatgtaaattataaaggaagaattttctatgttttacat 24185532  T
Q  108 aatcattttctaacatcactagtgctatttcgtgcaaatgcatagaaaaatagtattctgatatcaagttcctgttttgacatatagcaggagaagccgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24185533 aatcattttctaacatcactagtgctatttcgtgcaaatgcatagaaaaatagtattctgatatcaagttcctgttttgacatatagcaggagaagctgc 24185632  T
Q  208 atccgcatccgcatcaaagccaaagctgtcaccaagcaaatccttctcttcctcaaactgttcttccccatcctctcctttcttccagaggttgaagcat 307  Q
    ||      |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24185633 at------ccgcatcaaagccaaagctgtcaccaagcaaatcctcctcttcctcaaactgttcttccccatcctctcctttcttccagaggttgaagcat 24185726  T
Q  308 catgactcagaagaagaccatggccagaatcagaagaaatcagttatcaccaaagtaaaggagaaggccaagaagttacgccacactctcagcaagaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24185727 catgactcagaagaagaccatggccagaatcagaagaaatcagttatcaccaaagtaaaggagaaggccaagaagttacgccacactctcagcaagaaaa 24185826  T
Q  408 aacacgaggactggaccgctactagtccctctgcgggagcagagtcagaaggtgatggagcagaagaagatgctgaatatcatggagctccgagtaataa 507  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24185827 aacacgaggattggaccgctactagtccctctgcgggagcagggtcagaaggtgatggagcagaagaagatgctgaatatcatggagctccgagtaataa 24185926  T
Q  508 aataaatatataattgtcttctcttaatccttttttatttatatacatataattgttgtctcaaattaatatttcagtgtatgaatccgagatggcacct 607  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24185927 aataaatatataattgtcttctcttaattcttttttatttatatacatataattgttgtctcaaattaatatttcagtgtatgaatccgagatggcacct 24186026  T
Q  608 gaaggatacaaagaaaatgtcaggcaacattcaagaatgagtccaagaagcccacagacacatgttctgtcaaacaatgagaaacttgggttagaacaag 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24186027 gaaggatacaaagaaaatgtcaggcaacattcaagaatgagtccaagaagcccacagacacatgttctgtcaaacaatgagaaacttggattagaacaag 24186126  T
Q  708 ctagagaaaagacgctgagtcgttcactttcgaggaaaacaacacatcca 757  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24186127 ctagagaaaagacgctgagtcgttcactttcgaggaaaacaacacatcca 24186176  T

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