View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4999-Insertion-3 (Length: 601)
Name: NF4999-Insertion-3
Description: NF4999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4999-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 4785750 - 4785696
Alignment:
| Q |
151 |
tctgaagatgcaaacatatccctcaatcattattgaaaatagctggattcatcat |
205 |
Q |
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| T |
4785750 |
tctgaaaatgcaaacatatccctcaatcattattgaaaatagctggattcatcat |
4785696 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 558 - 597
Target Start/End: Original strand, 4785745 - 4785784
Alignment:
| Q |
558 |
ttcagatcatcataaatctcctcagacatggtcctgctca |
597 |
Q |
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| T |
4785745 |
ttcagatcatcataaatctcctcagacatggtcctgctca |
4785784 |
T |
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