View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4999-Insertion-5 (Length: 172)
Name: NF4999-Insertion-5
Description: NF4999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4999-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 50; Significance: 7e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 37188884 - 37188937
Alignment:
| Q |
110 |
gcctcagcatccagcaacaattcctcagaaaccaaacactgctcctcaagtttc |
163 |
Q |
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| T |
37188884 |
gcctcagcaaccagcaacaattcctcagaaaccaaacactgctcctcaagtttc |
37188937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 37893786 - 37893839
Alignment:
| Q |
110 |
gcctcagcatccagcaacaattcctcagaaaccaaacactgctcctcaagtttc |
163 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893786 |
gcctcagcaaccagcaacaattcctcagaaaccaaacactgctcctcaagtttc |
37893839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 37188781 - 37188812
Alignment:
| Q |
7 |
aatttgaagctggaatcttatatattaagctt |
38 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37188781 |
aatttgaagctggaatcttatatattaagctt |
37188812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 37893683 - 37893714
Alignment:
| Q |
7 |
aatttgaagctggaatcttatatattaagctt |
38 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37893683 |
aatttgaagctggaatcttatatattaagctt |
37893714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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