View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4999_high_10 (Length: 234)
Name: NF4999_high_10
Description: NF4999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4999_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 47310318 - 47310092
Alignment:
| Q |
1 |
gctcaaaccgtaaaaaacttttcacaattcagccacaaacacaccacaatcttcgatgaatttgacaaaaccaccaatccattgtccatcactgcctcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
47310318 |
gctcaaaccgtaaaaaacttttcacaattcagccacaaacacaccacaatcttcgatgaatttgacagaaccaccaatccattgtccatcaccgcctcta |
47310219 |
T |
|
| Q |
101 |
ataataccacaacaactaaactatattccctcccctacaagcaccatccgtatttaaattcacccaattatcttgcggaggcctccacctaaggaaacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47310218 |
ataataccacaacaactaaactatattccctcccctacaagcaccatccgtatttaaattcacccaattatcttgcggaggcctccacctaaggaaacct |
47310119 |
T |
|
| Q |
201 |
atcacacgttggaaataattttcttcg |
227 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
47310118 |
atcacacgttggaaataattttgttcg |
47310092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 50564758 - 50564617
Alignment:
| Q |
67 |
aaaaccaccaatccattgtccatcactgcctctaataataccacaacaactaaactatattccctcccctacaagcaccatccgtatttaaattcaccca |
166 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||| |||||| | ||||||| || ||| | || ||||||||| ||||||| |||||||| |
|
|
| T |
50564758 |
aaaaccaccaatccattctccatcactccctctaataataccaccacaact-agctatatttccacccttgcacgcaccatccctatttaacttcaccca |
50564660 |
T |
|
| Q |
167 |
attatcttgcggaggcctccacctaaggaaacctatcacacgttgg |
212 |
Q |
| |
|
|||| | ||||| ||||||||||| |||| ||||||||| |||| |
|
|
| T |
50564659 |
attaac---cggagacctccacctaatgaaatctatcacacattgg |
50564617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 31338640 - 31338691
Alignment:
| Q |
56 |
atgaatttgacaaaaccaccaatccattgtccatcactgcctctaataatac |
107 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
31338640 |
atgaatttagcaaaaccaccaatccattctccatcattccctctaataatac |
31338691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University