View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4999_high_4 (Length: 436)
Name: NF4999_high_4
Description: NF4999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4999_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 249 - 420
Target Start/End: Original strand, 28833629 - 28833801
Alignment:
| Q |
249 |
cctcaaacaatctttgacatgataacttgctacctaagggacagtaaaaatttaactctcaaataagtattaaatgatgaaagaaacactaaagccaaat |
348 |
Q |
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| T |
28833629 |
cctcaaacaatctttgacatgataacttgctacctaagggacagtaaaaatttaactctcaaataagtattaaatgatgaaagaaatactaaagccaaat |
28833728 |
T |
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| Q |
349 |
tatataaagtgtgaacatattgct-nnnnnnnngtttgctcatatcaacacactaatttactatttaatttta |
420 |
Q |
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| T |
28833729 |
tatataaagtgtgatcatattgctaaaaaaaaagtttggtcatatcaacacactaatttactatttaatttta |
28833801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 28833513 - 28833638
Alignment:
| Q |
103 |
gggtagaacatggtcaatgcaagacttcaattatagatatgagtattcaattcactgcattatgaacaaaatcagactatacgatgtttttcaagtttac |
202 |
Q |
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| T |
28833513 |
gggtagaacatggtcaatgcaagacttcaattatagatatgagtattcaattcactgcattatgaacaaaatcagactatacgatgtttttcaagtttag |
28833612 |
T |
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| Q |
203 |
ttttagcaagttttaacctcaaacaa |
228 |
Q |
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| T |
28833613 |
tttttgcaagttttaacctcaaacaa |
28833638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 28833419 - 28833478
Alignment:
| Q |
10 |
acatcatcacaacgaggcatgtatggagtagctttcctaaaaaagttgatctggacatgc |
69 |
Q |
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| T |
28833419 |
acatcatcacaacgaggcatgtatggagtagctttcctaaaaaagttgatctggacatgc |
28833478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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