View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4999_low_1 (Length: 591)
Name: NF4999_low_1
Description: NF4999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4999_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Original strand, 49996984 - 49997546
Alignment:
| Q |
19 |
ctttggtgacgagctttgcgcgtcaacaagatcctccatcttcttatatttgttagtaagcttcaatatgtcatccatgatctcattgtagtgttcctta |
118 |
Q |
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| T |
49996984 |
ctttggtgacgagctttgcgcgtcaacaagatcctccatcttcttatatttgttagtaagcttcaatatgtcatccatgatctcattgtagtgttcctta |
49997083 |
T |
|
| Q |
119 |
ctttttacggctacctgccacaatctaataaaagcatcataggctgcaaactgagcgaactctacatcatagttcattccatccatcaaattcgatgaca |
218 |
Q |
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| T |
49997084 |
ctttttacggctacctgccacaatctagtaaaagcatcataggctgcaaactgagcgaactctacatcatagttcattccatccatcaaattcgatgaca |
49997183 |
T |
|
| Q |
219 |
gtaaagcaatcttagcattcttagtccaccgtgtcaaaaccaaactgcttggaatatgatccacatgctcaaagatcattgcacgaaaaatatgcgaaca |
318 |
Q |
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| T |
49997184 |
gtaaagcaatcttagcattcttagtccaccgtgtcaaaaccaaattgcttggaatatgatccacatgctcaaagatcattgcacgaaaaatatgcgaaca |
49997283 |
T |
|
| Q |
319 |
ctgaatgccacaagactcaaaatgtctacacacacaataaaatgttgacttagaagtatcataaacaacttttgtttcaatactgggatggcaatacttg |
418 |
Q |
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| T |
49997284 |
cggaatgccacgagactcaaaatgtctacacacacaataaaatgttgacttagaagtatcataaacaacttttgtttcaatattgggatggcaatacttg |
49997383 |
T |
|
| Q |
419 |
gttagcttgaagataaccttcttcccatttaccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctg |
518 |
Q |
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| T |
49997384 |
attagcttgaagataaccttcttcccatttaccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctg |
49997483 |
T |
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| Q |
519 |
ttgtgtaaatttttgcagcatcattctcaaactcttgaagagacgtggtcaacacaggttctg |
581 |
Q |
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| T |
49997484 |
ttgtgtaaatttttgcagaatcattctcaaactcttgaagagacttggtcaacacaggttctg |
49997546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 331 - 578
Target Start/End: Complemental strand, 24803526 - 24803284
Alignment:
| Q |
331 |
agactcaaaatgtctacacacacaataaaatgttgacttagaagtatcataaacaacttttgtttcaatactgggatggcaatacttggttagcttgaag |
430 |
Q |
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| T |
24803526 |
agactcaaaatgtctacacaca--ataaaatgttgacttagaagtatcataaacaacttttgtttcaatattgggatgacaatacttggttagcttgaag |
24803429 |
T |
|
| Q |
431 |
ataaccttcttcccatttaccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaattt |
530 |
Q |
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| T |
24803428 |
ataaccttcttcccatttaccattcgcttaataacatttaatgcaccaaccaatacaatctgctctttaact---ttaaaaatctctgttgtgtaaattt |
24803332 |
T |
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| Q |
531 |
ttgcagcatcattctcaaactcttgaagagacgtggtcaacacaggtt |
578 |
Q |
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| T |
24803331 |
ttgcagcatcattctcaaactcttgaagagacgtggtcaacacaggtt |
24803284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 350 - 575
Target Start/End: Original strand, 52658261 - 52658482
Alignment:
| Q |
350 |
acacaataaaatgttgacttagaagtatcataaacaacttttgtttcaatactgggatggcaatacttggttagcttgaagataaccttcttcccattta |
449 |
Q |
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| T |
52658261 |
acacaataaaatgttgacttagaagtatcataaacaacttttgtttcaatattgggatggcaatacttggttagcttgaagataaccttctacccattta |
52658360 |
T |
|
| Q |
450 |
ccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctcaaa |
549 |
Q |
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| T |
52658361 |
ccattcgcttaataacgtttaatgcaccagccaatacaatctgctctttaact---ttaaaaatctctgttgtgtaaatttttgcagcatcattctcaaa |
52658457 |
T |
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| Q |
550 |
ctcttgaagagacgtggtcaacacag |
575 |
Q |
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| T |
52658458 |
ctcttgaagagatg-ggtcaacacag |
52658482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 548
Target Start/End: Original strand, 25518166 - 25518220
Alignment:
| Q |
494 |
tctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctcaa |
548 |
Q |
| |
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||||||||||| ||||| ||||||| |||||||||||| ||||||||| |||||| |
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| T |
25518166 |
tctttaacttctttaaagatctctgctgtgtaaattttggcagcatcaatctcaa |
25518220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 548
Target Start/End: Complemental strand, 19720335 - 19720281
Alignment:
| Q |
494 |
tctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctcaa |
548 |
Q |
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||||||||||| ||||| ||||||| |||||||||| | ||||||||| |||||| |
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| T |
19720335 |
tctttaacttctttaaagatctctgctgtgtaaattctggcagcatcaatctcaa |
19720281 |
T |
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Back To:
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