View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4999_low_2 (Length: 507)

Name: NF4999_low_2
Description: NF4999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4999_low_2
NF4999_low_2
[»] scaffold0001 (1 HSPs)
scaffold0001 (60-388)||(64797-65126)
[»] chr1 (16 HSPs)
chr1 (60-205)||(52183950-52184101)
chr1 (365-424)||(22667202-22667261)
chr1 (355-425)||(23897908-23897977)
chr1 (355-422)||(33735759-33735826)
chr1 (355-425)||(35405389-35405459)
chr1 (355-413)||(49762468-49762526)
chr1 (359-420)||(23935239-23935299)
chr1 (360-425)||(1240485-1240554)
chr1 (357-425)||(15103053-15103121)
chr1 (358-424)||(35204226-35204291)
chr1 (355-391)||(8246760-8246796)
chr1 (380-420)||(29664267-29664307)
chr1 (361-420)||(38742453-38742512)
chr1 (361-391)||(4626571-4626601)
chr1 (355-420)||(10976129-10976194)
chr1 (361-425)||(45012814-45012878)
[»] chr4 (14 HSPs)
chr4 (362-502)||(23870107-23870258)
chr4 (355-425)||(36071563-36071633)
chr4 (362-425)||(5627551-5627614)
chr4 (355-425)||(7102195-7102265)
chr4 (362-424)||(7853355-7853417)
chr4 (355-425)||(43515863-43515933)
chr4 (362-425)||(12320464-12320527)
chr4 (366-424)||(29118536-29118594)
chr4 (362-415)||(55147686-55147739)
chr4 (355-391)||(29369937-29369973)
chr4 (363-415)||(40807862-40807914)
chr4 (362-417)||(46443802-46443857)
chr4 (358-424)||(2113895-2113961)
chr4 (362-415)||(35372126-35372179)
[»] chr6 (13 HSPs)
chr6 (355-425)||(33344874-33344944)
chr6 (355-425)||(35121953-35122023)
chr6 (355-425)||(31787868-31787938)
chr6 (361-425)||(34329829-34329893)
chr6 (362-420)||(34573197-34573255)
chr6 (358-425)||(11274609-11274675)
chr6 (355-413)||(9815690-9815748)
chr6 (436-486)||(31787959-31788009)
chr6 (362-421)||(12174380-12174439)
chr6 (362-425)||(34540866-34540929)
chr6 (366-424)||(31153644-31153702)
chr6 (440-502)||(35121865-35121927)
chr6 (440-493)||(33344971-33345024)
[»] chr8 (20 HSPs)
chr8 (355-425)||(13580364-13580434)
chr8 (355-425)||(22930374-22930444)
chr8 (355-425)||(13236235-13236305)
chr8 (355-425)||(26835600-26835670)
chr8 (356-424)||(21347511-21347579)
chr8 (355-425)||(43872560-43872630)
chr8 (355-424)||(22486602-22486671)
chr8 (361-425)||(9191253-9191317)
chr8 (440-502)||(34142201-34142263)
chr8 (355-408)||(4350691-4350744)
chr8 (360-405)||(34142082-34142127)
chr8 (361-423)||(31277947-31278010)
chr8 (440-485)||(38075625-38075670)
chr8 (358-425)||(12181876-12181942)
chr8 (358-425)||(12426304-12426370)
chr8 (358-425)||(41849437-41849504)
chr8 (440-502)||(4350581-4350643)
chr8 (355-425)||(31383527-31383597)
chr8 (360-425)||(17786514-17786579)
chr8 (380-420)||(28376734-28376774)
[»] chr7 (16 HSPs)
chr7 (355-425)||(3351133-3351203)
chr7 (355-424)||(30095746-30095815)
chr7 (355-425)||(35812667-35812738)
chr7 (362-425)||(15133313-15133376)
chr7 (355-419)||(26912380-26912444)
chr7 (362-425)||(26914349-26914412)
chr7 (355-424)||(21129334-21129403)
chr7 (361-425)||(26448431-26448495)
chr7 (362-425)||(13431670-13431733)
chr7 (362-425)||(22318670-22318733)
chr7 (366-425)||(42335951-42336010)
chr7 (355-425)||(3940657-3940727)
chr7 (367-411)||(40351787-40351831)
chr7 (366-425)||(12177872-12177930)
chr7 (362-425)||(21828221-21828283)
chr7 (355-415)||(48008596-48008655)
[»] chr3 (13 HSPs)
chr3 (355-425)||(11383646-11383716)
chr3 (361-425)||(27538791-27538855)
chr3 (355-425)||(11365100-11365170)
chr3 (355-425)||(47000872-47000941)
chr3 (355-425)||(15670971-15671041)
chr3 (362-425)||(33510103-33510166)
chr3 (440-502)||(11383740-11383802)
chr3 (358-424)||(17713329-17713394)
chr3 (358-424)||(19014558-19014623)
chr3 (355-425)||(33290752-33290821)
chr3 (362-424)||(46744007-46744069)
chr3 (361-421)||(54417032-54417092)
chr3 (364-421)||(168696-168752)
[»] chr2 (16 HSPs)
chr2 (355-425)||(37912346-37912416)
chr2 (355-425)||(4206345-4206415)
chr2 (361-425)||(36186616-36186680)
chr2 (356-415)||(17271276-17271335)
chr2 (362-421)||(30257790-30257849)
chr2 (355-425)||(16646965-16647035)
chr2 (355-425)||(38561895-38561964)
chr2 (355-425)||(16547717-16547787)
chr2 (362-411)||(2887045-2887094)
chr2 (359-424)||(18829980-18830045)
chr2 (355-423)||(44157268-44157335)
chr2 (362-421)||(5163852-5163911)
chr2 (362-420)||(35280941-35280999)
chr2 (362-411)||(28148948-28148997)
chr2 (361-397)||(1241176-1241212)
chr2 (297-341)||(28556693-28556737)
[»] chr5 (13 HSPs)
chr5 (355-421)||(7886622-7886688)
chr5 (361-425)||(20870689-20870753)
chr5 (361-424)||(502861-502924)
chr5 (355-424)||(12263653-12263722)
chr5 (355-415)||(32257701-32257761)
chr5 (357-425)||(18626713-18626781)
chr5 (440-502)||(20870779-20870841)
chr5 (361-422)||(16570505-16570566)
chr5 (362-425)||(10325609-10325672)
chr5 (358-424)||(3193529-3193595)
chr5 (362-420)||(37147867-37147925)
chr5 (362-425)||(25034359-25034422)
chr5 (362-407)||(18600247-18600292)
[»] scaffold1173 (1 HSPs)
scaffold1173 (361-420)||(387-446)
[»] scaffold0531 (1 HSPs)
scaffold0531 (362-414)||(9761-9813)
[»] scaffold0527 (2 HSPs)
scaffold0527 (368-424)||(1711-1767)
scaffold0527 (368-424)||(9774-9830)
[»] scaffold0777 (1 HSPs)
scaffold0777 (358-424)||(5901-5967)


Alignment Details
Target: scaffold0001 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 60 - 388
Target Start/End: Original strand, 64797 - 65126
Alignment:
Q  60 ggcatatatatcttgcttttgattgatgtacgcaatgagacagctctacaatctactattttgctaaacatggatctttggactttttctgactgtacat 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  64797 ggcatatatatcttgcttttgattgatgtacgcaatgagacagctctaaaatctactattttgctaaacatggatctttggactttttctgaatgtacat 64896  T
Q  160 ctaagaatgtcacttgattgttaactattaccgattggtgtgatgggagagatgcatgcatgcttaagaagatagaagcaggggtggccctaagggcggc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  64897 ctaagaatgtcacttgattgttaactattaccgattggtgtgatgggagagatgcatgcatgcttaagaaggtagaagcaggggtggccctaagggcggc 64996  T
Q  260 ggaaggaacggtagttcagggcaccannnnnnnaggggcacaaaattattatatttacttagtaattagtacaataaagataga-nnnnnnnnnnnaatt 358  Q
    |||||| |||||||| || |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||            ||||    
T  64997 ggaagggacggtagtccaaggcaccatttttttaggggcacaaaattattatatttacttagtaattagtacaataaagatagattttttttttttaatt 65096  T
Q  359 tgctttgattaattctattgaaaatatatt 388  Q
    ||||||||||||||||||||||||||||||    
T  65097 tgctttgattaattctattgaaaatatatt 65126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 52183950 - 52184101
Alignment:
Q  60 ggcatatatatcttgcttttgattgatgtacgcaatg---agacagctctacaatctactattttgctaaacatggatctttggactttttctgactgta 156  Q
    ||||||||||||| ||||||||||||||||| ||||    | | ||||||| ||||||||||||| ||||| |||||||||  |||||||||||| ||||    
T  52183950 ggcatatatatctagcttttgattgatgtacacaatatttacaaagctctaaaatctactattttactaaaaatggatcttcagactttttctgaatgta 52184049  T
Q  157 catct---aagaatgtcacttgattgttaactattaccgattggtgtgatgg 205  Q
    |||||   |||||||||||||||||||||||||||||| |||||||| ||||    
T  52184050 catcttagaagaatgtcacttgattgttaactattaccaattggtgtcatgg 52184101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 22667261 - 22667202
Alignment:
Q  365 gattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22667261 gattaattctattgaaaatttatttttggataactttgattataaatgaatattttgcaa 22667202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 23897977 - 23897908
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||    
T  23897977 aatttgctttgattaattctatttaaaa-atatttttagataactttgattataaatgaatattttgcaac 23897908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 33735826 - 33735759
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgc 422  Q
    |||||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||| ||||||    
T  33735826 aatttggtttgattaattatattgaaaatatatttttagacaactttgattataaatgaatcttttgc 33735759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 35405389 - 35405459
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| ||||||||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||    
T  35405389 aattcgctttgattaattatatttaaaaaatatttttagataactttgattagaaatgaatattttgcaac 35405459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 49762526 - 49762468
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatga 413  Q
    ||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  49762526 aattttctttgattaattctattgaaaatatatttttagagaactttgattataaatga 49762468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 23935239 - 23935299
Alignment:
Q  359 tgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatatttt 420  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  23935239 tgctttgattaattctatttaaaa-atatttttagataactttgattataaatgaatatttt 23935299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 1240485 - 1240554
Alignment:
Q  360 gctttgattaattctattgaaaatatatttttg----gataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||||||||||||||||||||||||     || ||||| |||||||||||||| |||||||||    
T  1240485 gctttgattaattctattgaaaatatatttttttttagagaacttcgattataaatgaatcttttgcaac 1240554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 425
Target Start/End: Complemental strand, 15103121 - 15103053
Alignment:
Q  357 tttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||||||||   |||||||| || |||||||||||||||||||| || ||||||    
T  15103121 tttgttttgattaattctattgaagtaatatttttagagaactttgattataaatgaatcttgtgcaac 15103053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 35204291 - 35204226
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||||||||||| |||||| || |||||||| || || ||||||||| ||||||||||||||||    
T  35204291 ttgctttgattaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaa 35204226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 8246796 - 8246760
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatattttt 391  Q
    |||||| ||||||||||||||||||||||||||||||    
T  8246796 aatttgatttgattaattctattgaaaatatattttt 8246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 29664267 - 29664307
Alignment:
Q  380 aaatatatttttggataactttgattataaatgaatatttt 420  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  29664267 aaatatatttttagataacttcgattataaatgaatatttt 29664307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 420
Target Start/End: Original strand, 38742453 - 38742512
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatatttt 420  Q
    |||||||||  |||||||||||||||||||| || |||||||||||| ||| ||| ||||    
T  38742453 ctttgattatatctattgaaaatatatttttagagaactttgattatgaattaatctttt 38742512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 391
Target Start/End: Complemental strand, 4626601 - 4626571
Alignment:
Q  361 ctttgattaattctattgaaaatatattttt 391  Q
    |||||||||||||||||||||||||||||||    
T  4626601 ctttgattaattctattgaaaatatattttt 4626571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 10976194 - 10976129
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatatttt 420  Q
    |||||||||| ||  ||| ||||||||||||||||||  | |||||||||||||||| ||| ||||    
T  10976194 aatttgctttcatcgattatattgaaaatatatttttataaaactttgattataaataaatctttt 10976129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 45012878 - 45012814
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||||||||||||||| ||||||| ||  |  |||||||| ||||||| |||| ||||    
T  45012878 ctttgattaattctattgaaaatttatttttcgagtatcttgattatgaatgaatcttttacaac 45012814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 362 - 502
Target Start/End: Original strand, 23870107 - 23870258
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac-----------nnnnnnnnnnttgtaataattaaaa 450  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||                     |||||||||||||||    
T  23870107 tttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaaagcaagaaaaaaaaattgtaataattaaaa 23870206  T
Q  451 aggtacaatttattgtttcggctagggcaccaaaaattttaggaccggccct 502  Q
    |||| ||||||||||||||||| | |||||||||||| ||||||||||||||    
T  23870207 aggttcaatttattgtttcggccaaggcaccaaaaatcttaggaccggccct 23870258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 36071633 - 36071563
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||||||    
T  36071633 aattttctttgattaattcaattgaaaatatatttttagagaactttgattataaatgaatcttatgcaac 36071563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 5627551 - 5627614
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||| ||||||||| || |||||  |||||| |||||||||||||||||||||||||    
T  5627551 tttgattaattatattgaaaaaatgtttttatataactctgattataaatgaatattttgcaac 5627614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 7102195 - 7102265
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||| |||||||||| |||||||||||| |||||| || |||||| ||||||||||||| || ||||||    
T  7102195 aatttgttttgattaatcctattgaaaatacatttttagagaacttttattataaatgaatcttgtgcaac 7102265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 424
Target Start/End: Original strand, 7853355 - 7853417
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||||||  |||||||||||||||||| || ||||||||||||||||||||  |||||||    
T  7853355 tttgattaatgatattgaaaatatatttttagaaaactttgattataaatgaattctttgcaa 7853417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 43515933 - 43515863
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||| ||||||||||| |||| | |||||||| || || |||||||||||||||||||| |||||||||    
T  43515933 aatttggtttgattaattatattaagaatatattgttagaaaactttgattataaatgaatcttttgcaac 43515863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 12320464 - 12320527
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||| |||||| ||||| |||||  | ||||| ||||||||||||||||||||||||    
T  12320464 tttgattaattatattgagaatatttttttaaaaaacttcgattataaatgaatattttgcaac 12320527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 424
Target Start/End: Original strand, 29118536 - 29118594
Alignment:
Q  366 attaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||| |||||||||||| |||||  | |||||||||||| ||||||||||||||||    
T  29118536 attaattatattgaaaatatgtttttaaagaactttgattatgaatgaatattttgcaa 29118594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 55147739 - 55147686
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaat 415  Q
    ||||||||||| |||||||||| | ||||| || ||||||||||||||||||||    
T  55147739 tttgattaattttattgaaaatgtctttttagagaactttgattataaatgaat 55147686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 29369973 - 29369937
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatattttt 391  Q
    |||||| ||||||||||||||||||||||||||||||    
T  29369973 aatttgttttgattaattctattgaaaatatattttt 29369937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 40807914 - 40807862
Alignment:
Q  363 ttgattaattctattgaaaatatatttttggataactttgattataaatgaat 415  Q
    ||||||||||||||| ||||||| ||||| |||||| |||||||| |||||||    
T  40807914 ttgattaattctattaaaaatatgtttttagataacattgattatgaatgaat 40807862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 46443857 - 46443802
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatat 417  Q
    ||||||||||| ||||  |||||||||||| ||||| ||||||||| |||||||||    
T  46443857 tttgattaattttattataaatatatttttagataattttgattatgaatgaatat 46443802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 2113895 - 2113961
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||||||||||| |||||||||||| |||||  | ||| |||||||| ||| ||| ||||||||    
T  2113895 ttgctttgattaattatattgaaaatatgtttttaaagaaccttgattatgaattaatcttttgcaa 2113961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 35372179 - 35372126
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaat 415  Q
    ||||||||||| |||||||||||||||||| || | |||| |||||||| ||||    
T  35372179 tttgattaattatattgaaaatatatttttagagagctttaattataaacgaat 35372126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 33344874 - 33344944
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33344874 aattcgctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaac 33344944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 35122023 - 35121953
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35122023 aattcgctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaac 35121953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 31787868 - 31787938
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  31787868 aattcgctttgattaattctattgaaaatatatttgtagataactttaattataaatgaatattttgcaac 31787938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 34329893 - 34329829
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||||||  || |||||||||    
T  34329893 ctttgattaattctattgaaaatatatttttagagaactttgcttataaatagatcttttgcaac 34329829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 34573255 - 34573197
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatatttt 420  Q
    ||||||||||| ||||||||||||||||||  | |||||||||||||||||||| ||||    
T  34573255 tttgattaattttattgaaaatatatttttaaagaactttgattataaatgaatctttt 34573197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 11274609 - 11274675
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||||||| |||||| || |||||||| || || ||||||||| |||||||||||||||||    
T  11274609 ttgctttgattaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaac 11274675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 9815748 - 9815690
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatga 413  Q
    |||| ||||||||||| | |||||||||||||||||| || |||| |||||||||||||    
T  9815748 aattcgctttgattaactttattgaaaatatatttttagaaaactatgattataaatga 9815690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 31787959 - 31788009
Alignment:
Q  436 ttgtaataattaaaaaggtacaatttattgtttcggctagggcaccaaaaa 486  Q
    ||| ||||||||||||||||||||||||||||||| | ||| |||||||||    
T  31787959 ttgaaataattaaaaaggtacaatttattgtttcgtccaggacaccaaaaa 31788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 12174380 - 12174439
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttg 421  Q
    ||||||||||| |||| ||||||||||||| || |||||| ||| ||||||||| |||||    
T  12174380 tttgattaattatattaaaaatatatttttagagaactttaattgtaaatgaatcttttg 12174439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 34540929 - 34540866
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||||| |||||||||||||||||||||  ||||  |||||||| ||| ||| |||||||||    
T  34540929 tttgattagttctattgaaaatatatttttaaataatcttgattatgaataaattttttgcaac 34540866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 31153702 - 31153644
Alignment:
Q  366 attaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||| |||||||||||| |||||  ||||||||||| || ||||||| ||||||||    
T  31153702 attaattatattgaaaatatgtttttaaataactttgatcatgaatgaatcttttgcaa 31153644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 35121927 - 35121865
Alignment:
Q  440 aataattaaaaaggtacaatttattgtttcggctagggcaccaaaaattttaggaccggccct 502  Q
    ||||||||||| || | |||||||||||||| | |||||||||||||| ||||| | ||||||    
T  35121927 aataattaaaagggcataatttattgtttcgtccagggcaccaaaaatcttagggctggccct 35121865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 493
Target Start/End: Original strand, 33344971 - 33345024
Alignment:
Q  440 aataattaaaaaggtacaatttattgtttcggctagggcaccaaaaattttagg 493  Q
    ||||||||||| || | |||||||||||||| | |||||||||||||| |||||    
T  33344971 aataattaaaagggcataatttattgtttcgtccagggcaccaaaaatcttagg 33345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 13580434 - 13580364
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  13580434 aattcgctttgattaattctattgaaaatatatttttaaataactttggttataaatgaatattttgcaac 13580364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 22930374 - 22930444
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  22930374 aattcgctttgattaattctattgaaaaaatatttttagataactttgattataaatgaatattttacaac 22930444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 13236235 - 13236305
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||||| ||||||||||||||| || ||||||||||||||| |||| |||||||||    
T  13236235 aattcgctttgattaattctaatgaaaatatatttttagagaactttgattataaacgaattttttgcaac 13236305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 26835670 - 26835600
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||    
T  26835670 aattttcttttattaattctattgaaaatatatttttagagaactttgattataaatgaatcttgtgcaac 26835600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 21347579 - 21347511
Alignment:
Q  356 atttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    |||| |||||||||||||||||||||||||||||||  |||| ||||||||||||||||| || |||||    
T  21347579 atttcctttgattaattctattgaaaatatatttttaaataaatttgattataaatgaatcttgtgcaa 21347511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 43872560 - 43872630
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||||||| ||||||||||||| ||||||||||||  | |||||||||||||||||||| || ||||||    
T  43872560 aatttgctttcattaattctattgtaaatatatttttaaagaactttgattataaatgaatcttgtgcaac 43872630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 22486671 - 22486602
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    |||||| ||||||||||||||||||||||||  |||| || |||||||||||||||||||| || |||||    
T  22486671 aatttgttttgattaattctattgaaaatatcattttagagaactttgattataaatgaatcttgtgcaa 22486602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 9191253 - 9191317
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| |||| ||||    
T  9191253 ctttgattaattctattcaaaatatatttttagagaactatgattataaatgaatcttttacaac 9191317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 502
Target Start/End: Original strand, 34142201 - 34142263
Alignment:
Q  440 aataattaaaaaggtacaatttattgtttcggctagggcaccaaaaattttaggaccggccct 502  Q
    ||||||||||| ||||||||||||||||||| | || ||| ||||||| ||||||||||||||    
T  34142201 aataattaaaagggtacaatttattgtttcgtccagagcatcaaaaatcttaggaccggccct 34142263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 4350744 - 4350691
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattata 408  Q
    |||| |||||| |||||||||||||||||||||||||  |||||||||||||||    
T  4350744 aattcgctttggttaattctattgaaaatatatttttatataactttgattata 4350691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 34142082 - 34142127
Alignment:
Q  360 gctttgattaattctattgaaaatatatttttggataactttgatt 405  Q
    |||||||||||||||||||||||||||||||  |||||||||||||    
T  34142082 gctttgattaattctattgaaaatatattttcagataactttgatt 34142127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 31277947 - 31278010
Alignment:
Q  361 ctttgattaattctattgaaaatatat-ttttggataactttgattataaatgaatattttgca 423  Q
    ||||||||||||||||||||||||| | |||| || ||| |||||||||||||||| |||||||    
T  31277947 ctttgattaattctattgaaaatatttattttagagaaccttgattataaatgaatcttttgca 31278010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 485
Target Start/End: Complemental strand, 38075670 - 38075625
Alignment:
Q  440 aataattaaaaaggtacaatttattgtttcggctagggcaccaaaa 485  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||    
T  38075670 aataattaaaatggtacaatttattgtttcgtcaagggcaccaaaa 38075625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 12181876 - 12181942
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||| ||||| |||||| || |||||||| || || ||||||||| |||||||||||||||||    
T  12181876 ttgctttgactaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaac 12181942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 12426304 - 12426370
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||| ||||| |||||| || |||||||| || || ||||||||| |||||||||||||||||    
T  12426304 ttgctttgactaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaac 12426370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 41849437 - 41849504
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||||||||||||||||||  | ||  |||||||| ||||||| |||| ||||    
T  41849437 ttgcattgattaattctattgaaaatatatttttaaagaatcttgattattaatgaatctttttcaac 41849504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 4350643 - 4350581
Alignment:
Q  440 aataattaaaaaggtacaatttattgtttcggctagggcaccaaaaattttaggaccggccct 502  Q
    ||||||||||| ||||||||||||||||||| | ||| ||| ||||||  ||||||| |||||    
T  4350643 aataattaaaagggtacaatttattgtttcgtccaggacacgaaaaatcctaggaccagccct 4350581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 31383527 - 31383597
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||| |||| ||||||| ||||||||||||  |||| | ||||||||| ||| ||||||| |||||||||    
T  31383527 aatttcctttaattaattttattgaaaatatggttttagctaactttgaatatgaatgaatcttttgcaac 31383597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 17786579 - 17786514
Alignment:
Q  360 gctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||||  |||| ||||| |||||||| | || ||||||||| ||| |||||||||||||    
T  17786579 gctttgattaatcatattaaaaatctatttttgtagaattttgattatgaataaatattttgcaac 17786514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 28376734 - 28376774
Alignment:
Q  380 aaatatatttttggataactttgattataaatgaatatttt 420  Q
    |||||||||||| |||||||| |||| ||||||||||||||    
T  28376734 aaatatatttttagataacttcgattgtaaatgaatatttt 28376774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 3351133 - 3351203
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||    
T  3351133 aattcgctttgattaattctattgaaattatatttttagataactttgattataaatgaatattttacaac 3351203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 30095815 - 30095746
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    |||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  30095815 aattcgcttttattaattctattgaaaaaatatttttagataactttgattataaatgaatattttgcaa 30095746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 35812667 - 35812738
Alignment:
Q  355 aatttgctttgattaattctattga-aaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  35812667 aattcgctttgatcaattctattgataaatatatttttagataactttgattataaatgaatattttgcaac 35812738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 15133376 - 15133313
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| ||||    
T  15133376 tttgattaattctatttaaaaaatatttttagataactttgattataaatgaatattttacaac 15133313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 26912380 - 26912444
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattt 419  Q
    |||| |||||||||||||||||| || |||||||||| |||||||||||||| ||||||||||||    
T  26912380 aattcgctttgattaattctattcaagatatatttttagataactttgattacaaatgaatattt 26912444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 26914412 - 26914349
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||| ||||||||||||||||||  ||||| || |||||||||||||||||||||||    
T  26914412 tttgattaattatattgaaaatatatttttaaataacgttaattataaatgaatattttgcaac 26914349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 21129403 - 21129334
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    |||||| |||||||||||||||||||||||| ||||| || || ||||||||||||| ||| ||||||||    
T  21129403 aatttggtttgattaattctattgaaaatatttttttagagaattttgattataaattaatcttttgcaa 21129334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 26448431 - 26448495
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||||||| | ||| ||||||||| || ||||||||| |||||||||| |||||||||    
T  26448431 ctttgattaattctactaaaagtatatttttagagaactttgataataaatgaatcttttgcaac 26448495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 13431733 - 13431670
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||| |||||||||||||||||||||| |||| ||| |||||||| ||||||| ||| |||||    
T  13431733 tttgaataattctattgaaaatatatttgtggagaaccttgattatgaatgaatctttagcaac 13431670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 22318733 - 22318670
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||| |||||| ||||||||||| || |||||| ||||||||| ||| |||||||||    
T  22318733 tttgattaattatattgagaatatatttttagaaaactttaattataaataaatcttttgcaac 22318670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 425
Target Start/End: Complemental strand, 42336010 - 42335951
Alignment:
Q  366 attaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||| || |||||||||||||||  | |||||||||||||||||||| |||||||||    
T  42336010 attaattatagtgaaaatatatttttaaaaaactttgattataaatgaatcttttgcaac 42335951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 3940727 - 3940657
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||| ||||||||||||||||| ||||||| |||||  | |||||||||||||||| ||| || ||||||    
T  3940727 aatttactttgattaattctatttaaaatatctttttaaagaactttgattataaataaatcttgtgcaac 3940657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 40351831 - 40351787
Alignment:
Q  367 ttaattctattgaaaatatatttttggataactttgattataaat 411  Q
    |||||||||||||||||||||||||  | ||||||||||||||||    
T  40351831 ttaattctattgaaaatatatttttaaagaactttgattataaat 40351787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 12177872 - 12177930
Alignment:
Q  366 attaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||| |||||||||||||||||| || |||||| |||||| |||||| |||||||||    
T  12177872 attaattttattgaaaatatatttttagaaaacttt-attatagatgaatcttttgcaac 12177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 21828221 - 21828283
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||||||| ||||||||||||  ||||| || |||||||||||||||||||| || ||||||    
T  21828221 tttgattaatgctattgaaaatac-tttttagagaactttgattataaatgaatcttgtgcaac 21828283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 48008655 - 48008596
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaat 415  Q
    ||||| ||||||||||||||||| |||| ||| |||| || ||||||||||||||| ||||    
T  48008655 aatttactttgattaattctattaaaaaaata-ttttagagaactttgattataaaggaat 48008596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 11383646 - 11383716
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  11383646 aattcgctttgattaattcaattgaaaaaatatttttagataactttgattataaatgaatattttgcaac 11383716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 27538855 - 27538791
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  27538855 ctttgattaattctattgaaaatatatttttaaataactttgattagaaatgaatattttgcaac 27538791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 11365100 - 11365170
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||| |||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  11365100 aattcgctttgattaattcaattgaaaagatatttttaaataactttgattataaatgaatattttgcaac 11365170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 47000941 - 47000872
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  47000941 aattcgctttgattaattctattgaaaa-atatttttagataattttgattataaatgaatattttgcaac 47000872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 15670971 - 15671041
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||| |||||||||||||||||||||||| ||||| || |||||||||||||||||||| || ||||||    
T  15670971 aatttgttttgattaattctattgaaaatatctttttagaaaactttgattataaatgaatcttgtgcaac 15671041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 33510166 - 33510103
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||    
T  33510166 tttgattaattccattgaaaatatatttttagagaactttaattataaatgaatcttttgcaac 33510103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 502
Target Start/End: Original strand, 11383740 - 11383802
Alignment:
Q  440 aataattaaaaaggtacaatttattgtttcggctagggcaccaaaaattttaggaccggccct 502  Q
    ||||||||||| |||||||||||| |||||| | |||||||||||||| ||| | ||||||||    
T  11383740 aataattaaaagggtacaatttatagtttcgtccagggcaccaaaaatcttaaggccggccct 11383802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 17713329 - 17713394
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||||||||||| |||||| || |||||||| || || ||||||||| ||||||||||||||||    
T  17713329 ttgctttgattaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaa 17713394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 19014558 - 19014623
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||||||||||| |||||| || |||||||| || || ||||||||| ||||||||||||||||    
T  19014558 ttgctttgattaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaa 19014623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 33290752 - 33290821
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||||||||||||||| ||||| || ||||||||| || ||||||||| |||||||||| || ||||||    
T  33290752 aatttgctttgattaattttattg-aattatatttttagagaactttgatcataaatgaatcttgtgcaac 33290821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 424
Target Start/End: Original strand, 46744007 - 46744069
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    |||||||||||||||| |||||||||||||| | ||| || ||||| ||||||| ||||||||    
T  46744007 tttgattaattctattaaaaatatatttttgtagaaccttaattatgaatgaatcttttgcaa 46744069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 54417092 - 54417032
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttg 421  Q
    ||||||||||||||| ||||||||| |||||  | || ||||||||||||||||| |||||    
T  54417092 ctttgattaattctactgaaaatatgtttttaaagaattttgattataaatgaatcttttg 54417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 168752 - 168696
Alignment:
Q  364 tgattaattctattgaaaatatatttttggataactttgattataaatgaatattttg 421  Q
    ||||||||||||||||||||||| |||| || ||| |||||||| ||||||| |||||    
T  168752 tgattaattctattgaaaatata-ttttagagaaccttgattatgaatgaatcttttg 168696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 37912346 - 37912416
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37912346 aattcgctttgatttattctcttgaaaatatatttttgggtaactttgattataaatgaatattttgcaac 37912416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 4206415 - 4206345
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| |||||||||||||||||| |||| ||| |||| ||||||||| |||||||||||||||||||||||    
T  4206415 aattcgctttgattaattctatttaaaaaatacttttagataactttaattataaatgaatattttgcaac 4206345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 36186680 - 36186616
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||||| ||| |||||||||    
T  36186680 ctttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgcaac 36186616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 17271335 - 17271276
Alignment:
Q  356 atttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaat 415  Q
    ||||| ||||||||||| |||||||||||||||||| |  ||||||||||||||||||||    
T  17271335 atttgttttgattaattatattgaaaatatatttttagcaaactttgattataaatgaat 17271276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 30257849 - 30257790
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttg 421  Q
    ||||||||||| |||||||||||||||||| || |||||||||||||||| ||| |||||    
T  30257849 tttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttg 30257790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 16647035 - 16646965
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||| |||||||||||||||||||||||| ||||| || || ||| ||||||||||||| || ||||||    
T  16647035 aatttgttttgattaattctattgaaaatatctttttagagaattttaattataaatgaatcttgtgcaac 16646965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 38561895 - 38561964
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||| |||||||||||| ||||||||||| ||||| || |||||| |||||||||||||||| ||||||    
T  38561895 aatttgttttgattaattc-attgaaaatatttttttagagaactttcattataaatgaatattgtgcaac 38561964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 16547717 - 16547787
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||| ||||||||||| ||||||||||||  |||| || ||||||||||||||||| || |||| ||||    
T  16547717 aatttggtttgattaattatattgaaaatattattttagaaaactttgattataaatggatcttttacaac 16547787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 411
Target Start/End: Complemental strand, 2887094 - 2887045
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaat 411  Q
    |||||||||||||||| |||| |||||||| || ||||||||||||||||    
T  2887094 tttgattaattctattaaaaaaatatttttagagaactttgattataaat 2887045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 18830045 - 18829980
Alignment:
Q  359 tgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    |||| ||||||||| |||||||||||||||||| || |||  ||||||| ||||||| ||||||||    
T  18830045 tgctatgattaattttattgaaaatatatttttagagaacaatgattatgaatgaattttttgcaa 18829980  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 44157268 - 44157335
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgca 423  Q
    |||||||||||||||||||||||  |||||||||||| || ||  |||||||| |||||| ||||||||    
T  44157268 aatttgctttgattaattctattagaaatatatttttagagaaacttgattatgaatgaa-attttgca 44157335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 5163852 - 5163911
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttg 421  Q
    ||||||||||| |||||| |||||  |||| || |||||||||||||||||||| |||||    
T  5163852 tttgattaattatattgagaatattattttagaaaactttgattataaatgaatcttttg 5163911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 35280999 - 35280941
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatatttt 420  Q
    ||||||||||||||||||||||||||||||  |||| | | ||||| ||||||| ||||    
T  35280999 tttgattaattctattgaaaatatatttttaaataattatcattatgaatgaatctttt 35280941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 28148948 - 28148997
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaat 411  Q
    ||||||||||| ||||||||||| ||||||  | ||||||||||||||||    
T  28148948 tttgattaattatattgaaaataaatttttaaagaactttgattataaat 28148997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 1241176 - 1241212
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataa 397  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  1241176 ctttggttaattctattgaaaatatatttttagataa 1241212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 28556737 - 28556693
Alignment:
Q  297 gcacaaaattattatatttacttagtaattagtacaataaagata 341  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||||    
T  28556737 gcacaaaattattatttttacttagtagttagtactatatagata 28556693  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 7886688 - 7886622
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttg 421  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  7886688 aattcgctttgattaattctattgaaaatatatgtttagataactttgattataagtgaatattttg 7886622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 20870689 - 20870753
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  20870689 ctttgattaattttattgataatatatttttagataactttgattataaatgaatattctgcaac 20870753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 502861 - 502924
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||    
T  502861 ctttgattaattctattgaaaatatatttttagagaactttgattatgaatgaatcttttgcaa 502924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 12263722 - 12263653
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    |||| ||||||||||||||||||||||||||||||||  | ||||||||||||| |||||| ||||||||    
T  12263722 aattcgctttgattaattctattgaaaatatatttttaaagaactttgattatagatgaatcttttgcaa 12263653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 32257761 - 32257701
Alignment:
Q  355 aatttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaat 415  Q
    |||||||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||    
T  32257761 aatttgctttgattaattttattgaaaatatacttttagagaactttgattataaatgaat 32257701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 425
Target Start/End: Original strand, 18626713 - 18626781
Alignment:
Q  357 tttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    |||| ||||||||||||||||||| | |||||||| || |||||||||||||||||||| || ||||||    
T  18626713 tttgttttgattaattctattgaagaaatattttttgagaactttgattataaatgaatcttgtgcaac 18626781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 502
Target Start/End: Original strand, 20870779 - 20870841
Alignment:
Q  440 aataattaaaaaggtacaatttattgtttcggctagggcaccaaaaattttaggaccggccct 502  Q
    ||||||||||| ||||||||||||||||||| | ||||||| ||||||| |||||||| ||||    
T  20870779 aataattaaaatggtacaatttattgtttcgtccagggcactaaaaattctaggaccgaccct 20870841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 16570566 - 16570505
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgc 422  Q
    ||||||||||||||||| ||||||||||||| || ||||||||||| |||| ||| ||||||    
T  16570566 ctttgattaattctattaaaaatatatttttagagaactttgattaaaaattaatcttttgc 16570505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 10325672 - 10325609
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||| |||||| |||| |||||| || ||||||||| |||||||||| |||||||||    
T  10325672 tttgattaattatattgagaatacatttttagaaaactttgatcataaatgaatcttttgcaac 10325609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 3193595 - 3193529
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||||| ||||| |||||||||||| |||||  | |||||||||||| ||||||| ||||||||    
T  3193595 ttgctttgaataattatattgaaaatatgtttttaaagaactttgattatgaatgaatcttttgcaa 3193529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 37147925 - 37147867
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatatttt 420  Q
    ||||||||||| ||||||||||||||||||  | ||| || ||||||||||||||||||    
T  37147925 tttgattaattgtattgaaaatatatttttaaaaaaccttaattataaatgaatatttt 37147867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 25034422 - 25034359
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaac 425  Q
    ||||||||||| |||| ||||| ||||||| || |||||| || |||||||||| |||||||||    
T  25034422 tttgattaattgtattaaaaatgtatttttagaaaactttaataataaatgaattttttgcaac 25034359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 18600247 - 18600292
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattat 407  Q
    ||||||||||| |||||||||||| ||||| || ||||||||||||    
T  18600247 tttgattaattatattgaaaatatgtttttagagaactttgattat 18600292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 420
Target Start/End: Original strand, 387 - 446
Alignment:
Q  361 ctttgattaattctattgaaaatatatttttggataactttgattataaatgaatatttt 420  Q
    |||| |||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||    
T  387 ctttaattaattcaattgaaaaaatatttttagataactttgattataaattaatatttt 446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 9761 - 9813
Alignment:
Q  362 tttgattaattctattgaaaatatatttttggataactttgattataaatgaa 414  Q
    ||||||||||| |||||| ||||||||||| || |||||||||||||||||||    
T  9761 tttgattaattatattgagaatatatttttagaaaactttgattataaatgaa 9813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 1711 - 1767
Alignment:
Q  368 taattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||| |||||||||||||||||| || |||||||||||||||| ||| ||||||||    
T  1711 taattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaa 1767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 9774 - 9830
Alignment:
Q  368 taattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||| |||||||||||||||||| || |||||||||||||||| ||| ||||||||    
T  9774 taattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaa 9830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 5901 - 5967
Alignment:
Q  358 ttgctttgattaattctattgaaaatatatttttggataactttgattataaatgaatattttgcaa 424  Q
    ||||||||||||||| |||||||||||| |||||  | || ||||||||| ||||||| ||||||||    
T  5901 ttgctttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaattttttgcaa 5967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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