View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4999_low_3 (Length: 489)

Name: NF4999_low_3
Description: NF4999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4999_low_3
NF4999_low_3
[»] chr2 (21 HSPs)
chr2 (1-489)||(39493602-39494089)
chr2 (1-371)||(39144245-39144615)
chr2 (4-448)||(39425699-39426144)
chr2 (17-337)||(39188933-39189252)
chr2 (7-138)||(39604198-39604329)
chr2 (7-138)||(39099469-39099600)
chr2 (127-264)||(39131097-39131234)
chr2 (1-231)||(39421346-39421576)
chr2 (35-138)||(39138528-39138631)
chr2 (27-153)||(39396841-39396967)
chr2 (27-152)||(39472959-39473084)
chr2 (7-128)||(2362574-2362692)
chr2 (78-152)||(44624647-44624721)
chr2 (77-136)||(39152943-39153002)
chr2 (81-138)||(39196753-39196810)
chr2 (81-138)||(39223596-39223653)
chr2 (35-127)||(39216550-39216642)
chr2 (81-138)||(39205985-39206042)
chr2 (87-138)||(39370999-39371050)
chr2 (91-128)||(44615298-44615335)
chr2 (84-137)||(44895353-44895406)
[»] chr6 (1 HSPs)
chr6 (83-151)||(16114236-16114304)
[»] chr4 (1 HSPs)
chr4 (7-128)||(33152038-33152156)
[»] chr7 (1 HSPs)
chr7 (77-128)||(19808798-19808849)
[»] chr5 (2 HSPs)
chr5 (81-138)||(33562171-33562228)
chr5 (77-152)||(17060514-17060589)
[»] chr3 (1 HSPs)
chr3 (85-124)||(51575884-51575923)


Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 39493602 - 39494089
Alignment:
Q  1 ttttcctcagttcttcgagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493602 ttttcctcagttcttcgagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatc 39493701  T
Q  101 caaaacaacttttgatggatctgatgatccttgcagataaccaagaatgtcatcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39493702 caaaacaacttttgatggatctgatgatccttgcagataaccaagaatgtcatcatcaaacaactcaagctcatcagtttgctcagatgagagcaacatc 39493801  T
Q  201 aaacttctttcatcaatgacgggacttaattgattacctgtgcatgatgtaactgcatgattagctgcgcatattttaggctttctcaatattttattga 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39493802 aaacttctttcatcaatgacgggacttaattgattacctgtgtatgatgtaactgcatgattagctgcgcatatttta-gctttctcaatattttattga 39493900  T
Q  301 agaatcggtaaatcaagttgactatataaacttcataaaatatcatataaaataaaaagtgcaaaacctcttcctcatagtctgtaaggatattgaaatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39493901 agaatcggtaaatcaagttgactatataaacttcataaaatatcatataaaataaaaagtgcaaaacctcttcctcatattctgtaaggatattgaaatt 39494000  T
Q  401 tgaaccagtactgaaactcataagcttaacaatatttgcaatacacttaaaattaaaattgcgtcagtgcaatgatcgtcactttacat 489  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39494001 tgaaccagtactgaaactcataagcttaacaatatttgcaatatacttaaaattaaaattgcgtcagtgcaatgatcgtcactttacat 39494089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 39144615 - 39144245
Alignment:
Q  1 ttttcctcagttcttcgagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatc 100  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39144615 ttttcctcagttccttgagcagaagaatgtggctatcatcaataattacagcatcgtctcctatcttacactttttaataatcgggttctgtattatatc 39144516  T
Q  101 caaaacaacttttgatggatctgatgatccttgcagataaccaagaatgtcatcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatc 200  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39144515 caaaacaacttttgatggatctgatgatccttgaagattaccaagaatgtcatcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatc 39144416  T
Q  201 aaacttctttcatcaatgacgggacttaattgattacctgtgcatgatgtaactgcatgattagctgcgcatattttaggctttctcaatattttattga 300  Q
    |||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||| ||| ||||||||| |||||||||||||||| ||||    
T  39144415 aaacttctttcatcaatgtcgggacttaattgattacctatgtatgatgtaactgcataattagttgcacatatttta-gctttctcaatatttttttga 39144317  T
Q  301 agaatcggtaaatcaagttgactatataaacttcataaaatatcatataaaat-aaaaagtgcaaaacctct 371  Q
    |||||||||||| |||| |||| |||||||||||||||||||| ||||||||| ||| |||| |||||||||    
T  39144316 agaatcggtaaaccaaggtgacaatataaacttcataaaatattatataaaatgaaagagtgaaaaacctct 39144245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 448
Target Start/End: Original strand, 39425699 - 39426144
Alignment:
Q  4 tcctcagttcttcgagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaa 103  Q
    |||| ||||| | ||||||| ||||||||||||| ||||||||  ||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||    
T  39425699 tcctaagttcattgagcagatgaatgtggctatcctcaataataacagcatcatctcccatcttacactttttaataatagggttctgtattatttccaa 39425798  T
Q  104 aacaacttttgatggatctgatgatccttgcagataaccaagaatgtcatcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatcaaa 203  Q
    |||||||||||||||||||||  | |||||||||| ||| ||||||||||| ||| |||||||||| || || ||||||||||||| |||||||||||||    
T  39425799 aacaacttttgatggatctgaaaagccttgcagattacctagaatgtcatcgtcagacaactcaagttcctctgtttgctcacatgggagcaacatcaaa 39425898  T
Q  204 cttctttcatcaatgacgggacttaattgattacctgtgcatgatgtaactgcatgattagct-gcgcatattttaggctttctcaatattttattgaag 302  Q
    ||||||||||||||| |||||||||||||||||| |||| | ||||||||||||| ||||||| || |||| |||| |||| |||| |||||  ||||||    
T  39425899 cttctttcatcaatggcgggacttaattgattacatgtgtacgatgtaactgcataattagctagcacata-tttaagcttcctcagtatttatttgaag 39425997  T
Q  303 aatcggtaaatcaagttgactatataaacttcataaaatatcatataaaat-aaaaagtgcaaaacctcttcctcatagtctgtaaggatattgaaattt 401  Q
     || ||||||||||| |||| ||||| |||| ||| ||| | |||||| || ||| |||| ||||||||| || |||||| |||||| ||| | ||||||    
T  39425998 gattggtaaatcaaggtgacaatatatactttatataatgttatataacatgaaatagtgaaaaacctctcccacatagtttgtaagtatagtaaaattt 39426097  T
Q  402 gaaccagtactgaaactcataagcttaacaatatttgcaatacactt 448  Q
    ||||| |||||| |||||||||||||||   ||||||||||| ||||    
T  39426098 gaacctgtactgtaactcataagcttaatgctatttgcaataaactt 39426144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 39188933 - 39189252
Alignment:
Q  17 gagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaacaacttttgat 116  Q
    ||||||||||||||||||||||||||||||| || ||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||     
T  39188933 gagcagaagaatgtggctatcatcaataattacaacattgtctcccatctcacacttttgaataatggggttctgtattatatccaaaacaacttttgaa 39189032  T
Q  117 ggatctgatgatccttgcagataaccaagaatgtcatcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatcaaacttctttcatcaa 216  Q
    ||||||||| ||||||||| ||   |  ||||||| |||  ||   ||||||| || |||||||| ||||||| ||||||||||||||||||||||||||    
T  39189033 ggatctgataatccttgcaaattgacttgaatgtcgtcacaaattgactcaagttcgtcagtttgatcacatgggagcaacatcaaacttctttcatcaa 39189132  T
Q  217 tgacgggacttaattgattacctgtgcatgatgtaactgcatgattagct-gcgcatattttaggctttctcaatattttattgaagaatcggtaaatca 315  Q
     |  |||||||||||||||||||||| | ||||||||||||| ||||||| ||  ||| |||| |||| |||| || ||||||||||  || ||||||||    
T  39189133 cggtgggacttaattgattacctgtgtacgatgtaactgcataattagctagcagata-tttaagcttcctcagta-tttattgaaggttcagtaaatca 39189230  T
Q  316 agttgactatataaacttcata 337  Q
    || |||| ||||||||||||||    
T  39189231 aggtgacaatataaacttcata 39189252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 39604329 - 39604198
Alignment:
Q  7 tcagttcttcgagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaac 106  Q
    |||||| || ||||||||||||||  ||||||||||||||| |||||| |||||| |||||| |||||| ||||||||| ||||||||||||||||||||    
T  39604329 tcagttgtttgagcagaagaatgtctctatcatcaataattacagcattgtctcccatcttatacttttgaataatgggattctgtattatatccaaaac 39604230  T
Q  107 aacttttgatggatctgatgatccttgcagat 138  Q
    ||||||||||||||||||||||||||||||||    
T  39604229 aacttttgatggatctgatgatccttgcagat 39604198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 39099600 - 39099469
Alignment:
Q  7 tcagttcttcgagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaac 106  Q
    |||||| |||||||||||||||||  || |||||||||||| |||||| |||||| |||||| |||||| ||||||||| ||||||||||||||||||||    
T  39099600 tcagttgttcgagcagaagaatgtctctttcatcaataattacagcattgtctcccatcttatacttttgaataatgggattctgtattatatccaaaac 39099501  T
Q  107 aacttttgatggatctgatgatccttgcagat 138  Q
     |||||||||||||||||| ||||||||||||    
T  39099500 gacttttgatggatctgataatccttgcagat 39099469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 127 - 264
Target Start/End: Complemental strand, 39131234 - 39131097
Alignment:
Q  127 atccttgcagataaccaagaatgtcatcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatcaaacttctttcatcaatgacgggact 226  Q
    |||||||||||| ||| ||||||||||  ||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||  ||||||    
T  39131234 atccttgcagattacctagaatgtcatagtcagacaactcaagttcatcagttagctcacatgggagcaacatcaaacttctttcatcaatggtgggact 39131135  T
Q  227 taattgattacctgtgcatgatgtaactgcatgattag 264  Q
    |||||||||||||||| | || |||||||||| |||||    
T  39131134 taattgattacctgtgtacgacgtaactgcataattag 39131097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39421346 - 39421576
Alignment:
Q  1 ttttcctcagttcttcgagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatc 100  Q
    ||||| |||||| ||| |||||||  |||||| | || |||||||| ||| ||| ||||||  ||||| |||||| ||||||||||||||||||||||||    
T  39421346 ttttcatcagttgttctagcagaaagatgtggttctcttcaataatcgcatcattgtctcccttcttatacttttgaataatggggttctgtattatatc 39421445  T
Q  101 caaaacaacttttgatggatctgatgatccttgcagataaccaagaatgtcatcatcaaacaactcaagctcatcagtttgctcacatgagagcaacatc 200  Q
    ||||||| | | || |||||||||  ||||||||||||   |  ||||||||||| ||    ||||| | |||||||| |||||| ||| |||||||  |    
T  39421446 caaaacagcatgtgctggatctgaaaatccttgcagattgacttgaatgtcatcaccaggggactcaggttcatcagtctgctcaaatgggagcaactgc 39421545  T
Q  201 aaacttctttcatcaatgacgggacttaatt 231  Q
    |||||| || || ||||| | ||||| ||||    
T  39421546 aaacttgttccaacaatggcaggactaaatt 39421576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 39138631 - 39138528
Alignment:
Q  35 atcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgc 134  Q
    ||||||||||||  ||||||  |||||  ||||||||  |  |||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||    
T  39138631 atcatcaataatcacagcatgttctccattcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattcttgc 39138532  T
Q  135 agat 138  Q
    ||||    
T  39138531 agat 39138528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 39396841 - 39396967
Alignment:
Q  27 atgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaacaacttttgatggatctgatg 126  Q
    ||||||||||| |||||||   || ||| ||||||  ||||||||  |  |||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  39396841 atgtggctatcctcaataaccacaccattgtctcccttcttacacagtggaataatggggttttgtattatatccaaaacaagtcttgatggatctgatg 39396940  T
Q  127 atccttgcagataaccaagaatgtcat 153  Q
    || || |||||||| ||  ||||||||    
T  39396941 attctagcagataaacataaatgtcat 39396967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 39472959 - 39473084
Alignment:
Q  27 atgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaacaacttttgatggatctgatg 126  Q
    |||| |||| ||||||||||  |||||| ||||||  ||||||||  |  |||||| |||||| |||||||||||| ||||| ||||| |||||||||||    
T  39472959 atgttgctaccatcaataatcacagcatggtctcccttcttacaccgtggaataatcgggttcagtattatatccagaacaaattttgctggatctgatg 39473058  T
Q  127 atccttgcagataaccaagaatgtca 152  Q
    || ||||||||| | | |||||||||    
T  39473059 attcttgcagatcaactagaatgtca 39473084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 2362692 - 2362574
Alignment:
Q  7 tcagttcttcgagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaac 106  Q
    |||||| ||||||||||  |||||||  ||||||||||||| || |||  |||||   |||||||| |  ||| ||||||||||| |||||||| |||||    
T  2362692 tcagttgttcgagcagatcaatgtggtgatcatcaataattacaacattttctcc---cttacactgtggaatgatggggttctggattatatctaaaac 2362596  T
Q  107 aacttttgatggatctgatgat 128  Q
    | ||||||||||||||||||||    
T  2362595 atcttttgatggatctgatgat 2362574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 44624721 - 44624647
Alignment:
Q  78 ataatggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagataaccaagaatgtca 152  Q
    |||||||||||| |||||||||||||||||| ||||| ||||||||||||| || ||| || | |||||||||||    
T  44624721 ataatggggttcagtattatatccaaaacaatttttgctggatctgatgattctcgcaaattatcaagaatgtca 44624647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 39153002 - 39152943
Alignment:
Q  77 aataatggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcag 136  Q
    |||||| |||||||||||||||||||| |||| ||||| ||||||||||||| |||||||    
T  39153002 aataattgggttctgtattatatccaacacaatttttgctggatctgatgattcttgcag 39152943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 39196753 - 39196810
Alignment:
Q  81 atggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagat 138  Q
    ||||||||| |||| || |||||||||| ||||||||||||||||||| |||||||||    
T  39196753 atggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagat 39196810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 39223653 - 39223596
Alignment:
Q  81 atggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagat 138  Q
    ||||||||| |||| || |||||||||| ||||||||||||||||||| |||||||||    
T  39223653 atggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagat 39223596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 39216642 - 39216550
Alignment:
Q  35 atcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaacaacttttgatggatctgatga 127  Q
    |||| |||||||  |||||| ||||||  ||||||||  || |||| | ||||||||||| ||||||||||||| | ||||||||||||||||    
T  39216642 atcagcaataatcacagcattgtctcccttcttacacaattgaatagtagggttctgtatcatatccaaaacaagtcttgatggatctgatga 39216550  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 39205985 - 39206042
Alignment:
Q  81 atggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagat 138  Q
    ||||||||| |||| || |||||||||| |||||||||||||| |||| |||||||||    
T  39205985 atggggttcagtatcatttccaaaacaagttttgatggatctgctgattcttgcagat 39206042  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 39371050 - 39370999
Alignment:
Q  87 ttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagat 138  Q
    |||||||| ||||||||||||| | ||||||||||||||||| || ||||||    
T  39371050 ttctgtatcatatccaaaacaaatcttgatggatctgatgattctagcagat 39370999  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 44615335 - 44615298
Alignment:
Q  91 gtattatatccaaaacaacttttgatggatctgatgat 128  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  44615335 gtattatatccaaaacaagttttgctggatctgatgat 44615298  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 44895353 - 44895406
Alignment:
Q  84 gggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcaga 137  Q
    ||||||||||||||||||||||||| |||||  |||| ||||||| || |||||    
T  44895353 gggttctgtattatatccaaaacaagttttgcaggatttgatgattctcgcaga 44895406  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 16114304 - 16114236
Alignment:
Q  83 ggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagataaccaagaatgtc 151  Q
    |||||||||||||||||||||||||| | |||||||||||| |||| ||||||||||| ||| ||||||    
T  16114304 ggggttctgtattatatccaaaacaagtcttgatggatctgctgattcttgcagataaacaaaaatgtc 16114236  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 33152156 - 33152038
Alignment:
Q  7 tcagttcttcgagcagaagaatgtggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaac 106  Q
    |||||| |||||||| |  |||||||  |||||||||||||||||||| ||||||   |||||||  |  ||| ||||||||||| || |||||||||||    
T  33152156 tcagttgttcgagcaaatcaatgtggaaatcatcaataattgcagcattgtctcc---cttacacaatggaatgatggggttctggataatatccaaaac 33152060  T
Q  107 aacttttgatggatctgatgat 128  Q
    |  |||||||||||||||||||    
T  33152059 atattttgatggatctgatgat 33152038  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 19808849 - 19808798
Alignment:
Q  77 aataatggggttctgtattatatccaaaacaacttttgatggatctgatgat 128  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||||||    
T  19808849 aataattgggttttgtattatatccaaaacaacttttgttggatctgatgat 19808798  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 33562228 - 33562171
Alignment:
Q  81 atggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagat 138  Q
    ||||||||| |||| || |||||||||| ||||||||||||||||||| |||||||||    
T  33562228 atggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagat 33562171  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 17060589 - 17060514
Alignment:
Q  77 aataatggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagataaccaagaatgtca 152  Q
    |||||||||||||  ||||| ||||||||||| |||||||||||| |||||| |||||| || | | |||||||||    
T  17060589 aataatggggttcattattacatccaaaacaatttttgatggatccgatgattcttgcaaattaactagaatgtca 17060514  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 51575923 - 51575884
Alignment:
Q  85 ggttctgtattatatccaaaacaacttttgatggatctga 124  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  51575923 ggttctgtattatatccagaacatcttttgatggatctga 51575884  T

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