View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4999_low_6 (Length: 327)

Name: NF4999_low_6
Description: NF4999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4999_low_6
NF4999_low_6
[»] chr2 (18 HSPs)
chr2 (175-322)||(1102504-1102651)
chr2 (175-323)||(23366790-23366938)
chr2 (175-323)||(39938171-39938319)
chr2 (175-323)||(3518909-3519056)
chr2 (175-323)||(12969868-12970015)
chr2 (175-301)||(37673887-37674013)
chr2 (202-323)||(1646317-1646436)
chr2 (251-322)||(22388265-22388335)
chr2 (175-227)||(34224378-34224430)
chr2 (222-296)||(35179090-35179164)
chr2 (232-301)||(39562037-39562104)
chr2 (222-311)||(18078104-18078193)
chr2 (222-311)||(19976380-19976468)
chr2 (233-311)||(14779838-14779914)
chr2 (225-311)||(32840312-32840401)
chr2 (237-306)||(34242040-34242107)
chr2 (175-212)||(12969741-12969778)
chr2 (175-212)||(40756912-40756949)
[»] chr4 (28 HSPs)
chr4 (175-322)||(40122614-40122761)
chr4 (175-323)||(21661663-21661811)
chr4 (175-323)||(21670427-21670575)
chr4 (175-323)||(24706375-24706523)
chr4 (175-323)||(25704652-25704800)
chr4 (175-323)||(14261045-14261193)
chr4 (175-313)||(21310426-21310564)
chr4 (175-323)||(12071562-12071709)
chr4 (175-323)||(22321396-22321543)
chr4 (175-323)||(34324711-34324859)
chr4 (175-323)||(44568838-44568986)
chr4 (181-322)||(50767871-50768012)
chr4 (175-323)||(20249142-20249288)
chr4 (176-313)||(31892240-31892373)
chr4 (175-290)||(1988037-1988151)
chr4 (222-311)||(20714488-20714577)
chr4 (225-311)||(32543532-32543617)
chr4 (224-306)||(6129093-6129175)
chr4 (246-313)||(21064834-21064899)
chr4 (175-303)||(26676714-26676842)
chr4 (189-227)||(19361662-19361700)
chr4 (222-311)||(19692771-19692860)
chr4 (222-311)||(19703356-19703445)
chr4 (242-311)||(18507404-18507472)
chr4 (222-259)||(48652268-48652305)
chr4 (234-289)||(34284179-34284234)
chr4 (181-215)||(19362189-19362223)
chr4 (267-311)||(51777710-51777755)
[»] chr8 (31 HSPs)
chr8 (175-323)||(7146914-7147062)
chr8 (175-323)||(11174351-11174499)
chr8 (175-323)||(40058431-40058579)
chr8 (179-313)||(2540069-2540203)
chr8 (175-323)||(43275527-43275673)
chr8 (175-323)||(3585452-3585600)
chr8 (175-323)||(11646453-11646601)
chr8 (175-323)||(37345572-37345720)
chr8 (175-323)||(40918859-40919005)
chr8 (175-323)||(27034998-27035144)
chr8 (181-323)||(30999652-30999791)
chr8 (175-323)||(36068081-36068229)
chr8 (175-320)||(20546420-20546563)
chr8 (175-227)||(8697898-8697950)
chr8 (179-306)||(28562426-28562554)
chr8 (175-227)||(41307961-41308013)
chr8 (175-227)||(45278701-45278753)
chr8 (179-227)||(10646597-10646645)
chr8 (232-311)||(13881094-13881174)
chr8 (175-227)||(40486453-40486505)
chr8 (222-311)||(28326797-28326883)
chr8 (176-311)||(35866616-35866751)
chr8 (233-306)||(10181002-10181074)
chr8 (222-313)||(37510314-37510405)
chr8 (179-306)||(28567924-28568051)
chr8 (179-306)||(28575517-28575644)
chr8 (225-303)||(27563999-27564075)
chr8 (224-311)||(30906828-30906917)
chr8 (175-215)||(41305763-41305803)
chr8 (1-37)||(16890256-16890292)
chr8 (183-215)||(45278021-45278053)
[»] chr6 (21 HSPs)
chr6 (175-323)||(29260193-29260341)
chr6 (175-323)||(1605580-1605727)
chr6 (175-323)||(8626483-8626631)
chr6 (181-323)||(30734611-30734753)
chr6 (175-323)||(13757209-13757356)
chr6 (175-323)||(15064823-15064970)
chr6 (175-313)||(7761302-7761438)
chr6 (175-323)||(4129436-4129576)
chr6 (175-322)||(17942444-17942593)
chr6 (189-322)||(31559865-31559998)
chr6 (175-313)||(8235625-8235763)
chr6 (180-290)||(30734771-30734879)
chr6 (175-227)||(19996715-19996767)
chr6 (225-306)||(11370630-11370711)
chr6 (223-311)||(14287038-14287125)
chr6 (222-304)||(3798151-3798233)
chr6 (225-311)||(21277574-21277659)
chr6 (175-215)||(19996323-19996363)
chr6 (175-212)||(15064696-15064733)
chr6 (175-212)||(17942682-17942719)
chr6 (232-265)||(33845469-33845502)
[»] chr5 (24 HSPs)
chr5 (175-323)||(30720620-30720768)
chr5 (175-323)||(12806981-12807129)
chr5 (175-313)||(25773650-25773788)
chr5 (175-323)||(10285185-10285333)
chr5 (175-323)||(36561227-36561375)
chr5 (175-323)||(40886738-40886886)
chr5 (175-313)||(37900762-37900900)
chr5 (185-313)||(7277560-7277688)
chr5 (212-323)||(25683357-25683467)
chr5 (175-322)||(16983259-16983407)
chr5 (222-311)||(30403101-30403191)
chr5 (104-167)||(2225574-2225637)
chr5 (224-299)||(23098386-23098461)
chr5 (175-223)||(15305216-15305264)
chr5 (177-311)||(734478-734611)
chr5 (175-311)||(39070884-39071020)
chr5 (179-311)||(11319564-11319696)
chr5 (175-259)||(11796452-11796536)
chr5 (175-215)||(15304823-15304863)
chr5 (3-34)||(2225707-2225738)
chr5 (233-311)||(16054173-16054249)
chr5 (234-311)||(1056422-1056498)
chr5 (104-153)||(3257300-3257349)
chr5 (175-212)||(25683230-25683267)
[»] chr1 (35 HSPs)
chr1 (175-323)||(23045407-23045555)
chr1 (175-323)||(40783785-40783933)
chr1 (175-323)||(284334-284482)
chr1 (175-323)||(321627-321775)
chr1 (175-313)||(23526241-23526379)
chr1 (175-313)||(24772043-24772181)
chr1 (175-313)||(27211102-27211240)
chr1 (181-313)||(46771644-46771776)
chr1 (175-323)||(47037980-47038126)
chr1 (194-313)||(33082765-33082884)
chr1 (189-322)||(52037252-52037382)
chr1 (181-322)||(1749314-1749455)
chr1 (175-227)||(3943061-3943113)
chr1 (175-227)||(9588671-9588723)
chr1 (175-227)||(13984991-13985043)
chr1 (175-227)||(41959079-41959131)
chr1 (225-302)||(1837978-1838053)
chr1 (233-315)||(7765072-7765154)
chr1 (222-311)||(31003926-31004012)
chr1 (222-296)||(3657125-3657199)
chr1 (222-303)||(40261419-40261501)
chr1 (175-311)||(51064893-51065032)
chr1 (188-240)||(40564241-40564293)
chr1 (175-215)||(44227849-44227889)
chr1 (179-227)||(44228228-44228276)
chr1 (233-311)||(18396754-18396832)
chr1 (222-311)||(52478016-52478103)
chr1 (242-311)||(31061594-31061662)
chr1 (234-299)||(40562733-40562797)
chr1 (175-215)||(3943763-3943803)
chr1 (224-311)||(27143151-27143239)
chr1 (175-215)||(41959809-41959849)
chr1 (182-227)||(1168369-1168414)
chr1 (175-215)||(9589631-9589671)
chr1 (222-257)||(14351954-14351989)
[»] scaffold1431 (1 HSPs)
scaffold1431 (175-323)||(27-175)
[»] chr7 (19 HSPs)
chr7 (175-323)||(10981509-10981657)
chr7 (175-323)||(27813812-27813960)
chr7 (176-323)||(36453252-36453399)
chr7 (175-323)||(40348961-40349109)
chr7 (175-323)||(25614481-25614627)
chr7 (175-313)||(47110452-47110588)
chr7 (222-306)||(3091565-3091649)
chr7 (224-311)||(16662146-16662231)
chr7 (224-311)||(17636506-17636591)
chr7 (175-227)||(25060133-25060185)
chr7 (175-227)||(2911548-2911600)
chr7 (234-313)||(27942177-27942256)
chr7 (224-311)||(37983206-37983289)
chr7 (232-303)||(16360442-16360511)
chr7 (232-322)||(3498884-3498973)
chr7 (222-306)||(7743542-7743625)
chr7 (1-37)||(20949196-20949232)
chr7 (180-215)||(25059456-25059491)
chr7 (175-215)||(2910860-2910900)
[»] chr3 (35 HSPs)
chr3 (175-323)||(3383077-3383225)
chr3 (175-323)||(13364844-13364992)
chr3 (175-323)||(198856-199004)
chr3 (175-323)||(46694238-46694386)
chr3 (175-313)||(29375139-29375277)
chr3 (175-323)||(19241796-19241944)
chr3 (175-323)||(36881283-36881429)
chr3 (175-323)||(23088059-23088207)
chr3 (175-323)||(43750138-43750285)
chr3 (181-274)||(32835133-32835226)
chr3 (175-295)||(13702770-13702890)
chr3 (175-252)||(27707363-27707440)
chr3 (175-227)||(12094583-12094635)
chr3 (175-227)||(19911510-19911562)
chr3 (175-227)||(44277455-44277507)
chr3 (233-306)||(37780996-37781069)
chr3 (175-227)||(38805246-38805298)
chr3 (191-259)||(48820444-48820512)
chr3 (222-323)||(26105079-26105180)
chr3 (226-311)||(19897067-19897152)
chr3 (175-259)||(37293438-37293522)
chr3 (224-311)||(53559750-53559837)
chr3 (262-320)||(27707119-27707177)
chr3 (225-302)||(1455297-1455374)
chr3 (175-243)||(48963157-48963223)
chr3 (175-215)||(19912174-19912214)
chr3 (175-215)||(38806341-38806381)
chr3 (183-227)||(4226716-4226759)
chr3 (175-215)||(12095423-12095463)
chr3 (175-215)||(44276776-44276816)
chr3 (224-302)||(44522491-44522567)
chr3 (233-311)||(24064283-24064361)
chr3 (183-227)||(4235760-4235803)
chr3 (1-37)||(17003565-17003601)
chr3 (272-312)||(48963219-48963259)
[»] scaffold0054 (1 HSPs)
scaffold0054 (175-313)||(45455-45593)
[»] scaffold1770 (1 HSPs)
scaffold1770 (175-323)||(171-311)
[»] scaffold0062 (1 HSPs)
scaffold0062 (189-322)||(394-525)
[»] scaffold0056 (1 HSPs)
scaffold0056 (224-311)||(70874-70961)
[»] scaffold0257 (2 HSPs)
scaffold0257 (175-227)||(23468-23520)
scaffold0257 (175-215)||(23872-23912)
[»] scaffold0025 (1 HSPs)
scaffold0025 (240-313)||(65301-65375)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 1102504 - 1102651
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1102504 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 1102603  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctct 322  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||    
T  1102604 ctataatacccttaaccatttattatttcattttatttttttctctct 1102651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 23366790 - 23366938
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23366790 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgtttt 23366889  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23366890 ctataatacccttaatcatttattatttcattttatttttttctctctc 23366938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 39938171 - 39938319
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39938171 actccctccgtttcaaaatacatgaccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 39938270  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  39938271 ctataatacccttaatcatttattatttcattttatttttttctctctc 39938319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 3518909 - 3519056
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3518909 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 3519008  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||||||||||  |||||||||||||||||||||| |||||||||    
T  3519009 ctataatacccttaataatttattatttcattttatttt-ttctctctc 3519056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 12970015 - 12969868
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | ||||    
T  12970015 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtatatttt 12969916  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  12969915 ctataatacccttaaccatttattattttattctatttt-ttctctctc 12969868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 37674013 - 37673887
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37674013 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 37673914  T
Q  275 ttataatacccttaaccatttattatt 301  Q
     |||||||||||||| |||||||||||    
T  37673913 ctataatacccttaatcatttattatt 37673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 202 - 323
Target Start/End: Original strand, 1646317 - 1646436
Alignment:
Q  202 attttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatt 301  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||    
T  1646317 attttggagaaattgcagcaaccaagaaactaaataaattttgttatttttgatgaaaata--tgtgtgttttctataatacccttaatcatttattatt 1646414  T
Q  302 tcattttattttcttctctctc 323  Q
    |||||||||||| |||||||||    
T  1646415 tcattttatttttttctctctc 1646436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 251 - 322
Target Start/End: Complemental strand, 22388335 - 22388265
Alignment:
Q  251 ttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttattttcttctctct 322  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  22388335 ttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt-ttctctct 22388265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 34224430 - 34224378
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34224430 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 34224378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 35179164 - 35179090
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccattta 296  Q
    |||||||||  ||||||||||||||||||||||||||| | ||||||| |||| ||||||| ||||||| |||||    
T  35179164 accaagaaatgaaataaattttgttatttttgatgaaattttgtgtgttttttctataataaccttaactattta 35179090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 39562104 - 39562037
Alignment:
Q  232 caaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatt 301  Q
    ||||||||||||||||||||||| |||| ||| | |||  ||||| ||||||||||||||||||||||||    
T  39562104 caaataaattttgttatttttgaagaaattatttttgt--tttttctaatacccttaaccatttattatt 39562037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 18078104 - 18078193
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||| ||| |||||||||||||||||||||||||||  | | ||||  |||| |||||||| ||| ||||||||||| |||||| ||||    
T  18078104 accaaaaaatcaaataaattttgttatttttgatgaatttttttgtggattttctataatactcttgaccatttattaattcattctatt 18078193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 19976380 - 19976468
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||| ||||||||||||| || ||||||| ||| ||||||| | |||| ||||||||||||| | ||||||||||| ||| ||||    
T  19976380 accaagaaatcaaataaattttggtacttttgataaaattatgtgt-ttttttctataatacccttacctatttattattttattatatt 19976468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 14779838 - 14779914
Alignment:
Q  233 aaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||||| ||||||||||||||| ||| ||||| |||| |||||||  ||||  |||||||||||||||| ||||    
T  14779838 aaataaatttttttatttttgatgaaattatttgtgttttttctataata--cttactcatttattatttcattatatt 14779914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 311
Target Start/End: Complemental strand, 32840401 - 32840312
Alignment:
Q  225 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt---tttttataatacccttaaccatttattatttcattttatt 311  Q
    |||||| |||||||||||||||||||||||||||| | ||||| | |   ||| ||||||||| ||| | ||||||||||||||| ||||    
T  32840401 aagaaatcaaataaattttgttatttttgatgaaattctgtgtttttttctttctataataccattatcgatttattatttcattctatt 32840312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 34242040 - 34242107
Alignment:
Q  237 aaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcatt 306  Q
    ||||||||||||||||||||||| | ||||| |  ||||| ||| ||||||| |||||||||||||||||    
T  34242040 aaattttgttatttttgatgaaattctgtgttt--tttttgtaacacccttacccatttattatttcatt 34242107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 12969741 - 12969778
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaa 212  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  12969741 actccctccgtttcataatacttgtccattttggagaa 12969778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 40756912 - 40756949
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaa 212  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  40756912 actccctccgtttcataatacttgtccattttggagaa 40756949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 40122761 - 40122614
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40122761 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 40122662  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctct 322  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||    
T  40122661 ctataatacccttaaccatttattatttcattttatttttttctctct 40122614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 21661811 - 21661663
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21661811 actccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 21661712  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  21661711 ctataatacctttaaccatttattatttcattttatttttttctctctc 21661663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 21670575 - 21670427
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21670575 actccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaatttttttatttttgatgaaaatatgtgtgtgtttt 21670476  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  21670475 ctataatacctttaaccatttattatttcattttatttttttctctctc 21670427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 24706523 - 24706375
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24706523 actccatccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 24706424  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  24706423 ctataatacccttaatcatttattatttcattttatttttttctctctc 24706375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 25704652 - 25704800
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25704652 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 25704751  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| || ||||||    
T  25704752 ctataatacccttaatcatttattatttcattttatttttttttctctc 25704800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 14261045 - 14261193
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14261045 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgataaaaatatgtgtgtgtttt 14261144  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||||||||||  |||||||||||||||||||||| |||||||||    
T  14261145 ctataatacccttaataatttattatttcattttatttttttctctctc 14261193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 21310426 - 21310564
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21310426 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 21310525  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     |||||||||||||| |||||||||||||||||| ||||    
T  21310526 ctataatacccttaatcatttattatttcattttttttt 21310564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 12071562 - 12071709
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  12071562 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaataaactaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 12071661  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  12071662 ctataatacccttaatcatttattatttcattttatttt-ttctctctc 12071709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 22321543 - 22321396
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22321543 actccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgtttt 22321444  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  22321443 ctataatacccttaatcatttattatttcattttatttt-ttctctctc 22321396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 34324859 - 34324711
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaat-aaattttgttatttttgatgaaaatatgtgtgtgttt 273  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  34324859 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaattaaattttgttatttttgatgaaaatatgtgtgtgttt 34324760  T
Q  274 tttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
    | |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  34324759 tctataatacccttaatcatttattatttcattttatttt-ttctctctc 34324711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 44568838 - 44568986
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  44568838 actccttccgtttcaaaatacatgtccattttgaagaaattgcactaaccaaaaaaccaaataaattttgttattttttatgaaaatatgtgtgtgtttt 44568937  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  44568938 ctataatacccttaatcatttattatttcattttatttttttctctctc 44568986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 181 - 322
Target Start/End: Original strand, 50767871 - 50768012
Alignment:
Q  181 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataa 280  Q
    ||||||||||||||||| | |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  50767871 tccgtttcaaaatacatattcattttagagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataa 50767970  T
Q  281 tacccttaaccatttattatttcattttattttcttctctct 322  Q
    |||||||||  |||||||||||||||||||||| ||||||||    
T  50767971 tacccttaataatttattatttcattttatttttttctctct 50768012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 20249288 - 20249142
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||    
T  20249288 actctctccgtttcaaaatacatgtccattttggataaattgtattaaccaagaaaccaaataaattttgttatttttgaagaaattatgtgtgtg-ttt 20249190  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  20249189 ctataatacccttaaccatttattattttattctatttt-ttctctctc 20249142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 176 - 313
Target Start/End: Original strand, 31892240 - 31892373
Alignment:
Q  176 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt 275  Q
    |||||||||| ||||||||||||| ||||||  |||||||||||||||||||||| |||||||||||| ||||||||||||||| ||    ||||||||     
T  31892240 ctccctccgtatcaaaatacatgttcattttaaagaaattgcagtaaccaagaaatcaaataaattttattatttttgatgaaatta----tgtgttttc 31892335  T
Q  276 tataatacccttaaccatttattatttcattttatttt 313  Q
    ||||||||| || |||||||||||||||||| ||||||    
T  31892336 tataatacctttgaccatttattatttcattctatttt 31892373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 175 - 290
Target Start/End: Original strand, 1988037 - 1988151
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| || |||| |||||| ||||| |||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||| ||||||||    
T  1988037 actccatctgttttaaaatatatgtctattt-ggagaaattgcagtaactaagaaatcaaataaattttattatttttgatgaaattatgtatgtgtttt 1988135  T
Q  275 ttataatacccttaac 290  Q
     |||||||||||||||    
T  1988136 ctataatacccttaac 1988151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 20714577 - 20714488
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt-tataatacccttaaccatttattatttcattttatt 311  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  20714577 accaataaatcaaataaattttgttatttttgatgaaactatgtgtgtgtttttctataata-ccttaaccatttattatttcattatatt 20714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 32543532 - 32543617
Alignment:
Q  225 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    |||||||||||||| |||||||| ||||||||||| | | ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  32543532 aagaaaccaaataatttttgttaattttgatgaaattctttgtgt-ttttttataatacccttaatcatttattatttcattttatt 32543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 6129175 - 6129093
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcatt 306  Q
    ||||||| |||||||||||||||||||||||| ||| | | ||| | |||| || ||||||||||| ||||||||||||||||    
T  6129175 caagaaatcaaataaattttgttatttttgataaaattctttgtattttttctacaatacccttaatcatttattatttcatt 6129093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 21064834 - 21064899
Alignment:
Q  246 tatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatttt 313  Q
    |||||||||||||| ||||||  ||||||||||||||| |||||| ||||||||||||||| ||||||    
T  21064834 tatttttgatgaaattatgtg--tgttttttataatactcttaactatttattatttcattctatttt 21064899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 26676842 - 26676714
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||| |||||||||| ||||| | ||||||||| ||||||| ||   |||||| || ||||||||| |||| |||||| |||||| | |  |||| ||||    
T  26676842 actctctccgtttcacaatacttatccattttgaagaaattacacataccaaggaatcaaataaatgttgtcattttttatgaaattcttcgtgtttttt 26676743  T
Q  275 ttataatacccttaaccatttattatttc 303  Q
     |||||||||||||  |||||||||||||    
T  26676742 ctataatacccttactcatttattatttc 26676714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 19361662 - 19361700
Alignment:
Q  189 aaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19361662 aaaatacatgtccattttggagaaattgcagtaaccaag 19361700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 19692771 - 19692860
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||| ||||||||| |||| |||||| |||||| | | ||||| |||| ||||||| |||||  |||||||||||||||| ||||    
T  19692771 accaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttattatttcattctatt 19692860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 19703356 - 19703445
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||| ||||||||| |||| |||||| |||||| | | ||||| |||| ||||||| |||||  |||||||||||||||| ||||    
T  19703356 accaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttattatttcattctatt 19703445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 18507472 - 18507404
Alignment:
Q  242 ttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    |||||||||||||||||| | ||||||| |||| ||||||| |||| || ||||||||||||||| ||||    
T  18507472 ttgttatttttgatgaaattttgtgtgttttttctataata-ccttgacaatttattatttcattatatt 18507404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 48652268 - 48652305
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaa 259  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  48652268 accaagaaatcaaataaattttgttatttttgatgaaa 48652305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 34284234 - 34284179
Alignment:
Q  234 aataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaa 289  Q
    |||||||||||||| ||||||||||| ||| ||| | |||| ||||||||||||||    
T  34284234 aataaattttgttacttttgatgaaactatttgtattttttctataatacccttaa 34284179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 19362223 - 19362189
Alignment:
Q  181 tccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||||| ||||||||    
T  19362223 tccgtttcaaaatacatgtccattttagagaaatt 19362189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 51777710 - 51777755
Alignment:
Q  267 tgtgttttt-tataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||| |||||||| ||||||||||||||||||||| |||||    
T  51777710 tgtgtttttctataatactcttaaccatttattatttcatgttatt 51777755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 7146914 - 7147062
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7146914 actccttccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 7147013  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  7147014 ttataatacccttaatcatttattatttcattttatttttttctctctc 7147062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 11174499 - 11174351
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11174499 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 11174400  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  11174399 ctataatacccttaatcatttattatttcattttatttttttctctctc 11174351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 40058579 - 40058431
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058579 actccctccgtttcaaaatacatgtccatttcggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 40058480  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  40058479 ctataatacccttaatcatttattatttcattttatttttttctctctc 40058431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 179 - 313
Target Start/End: Complemental strand, 2540203 - 2540069
Alignment:
Q  179 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttat 278  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2540203 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 2540104  T
Q  279 aatacccttaaccatttattatttcattttatttt 313  Q
    ||||||||||| |||||||||||||||||||||||    
T  2540103 aatacccttaatcatttattatttcattttatttt 2540069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 43275673 - 43275527
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  43275673 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgtttt 43275576  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  43275575 ctataatacccttaatcatttattatttcattttatttttttctctctc 43275527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 3585452 - 3585600
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3585452 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 3585551  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||| ||| | |||||||    
T  3585552 ctataatacccttaatcatttattatttcattttactttttcctctctc 3585600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 11646601 - 11646453
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11646601 actcccttcgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 11646502  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  11646501 ctataatacccttaatcatttattatttcattttacttttttctctctc 11646453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 37345572 - 37345720
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37345572 actccctccgtttcaaaatacatgtccattttgaagaaattgcaccaaccaagaaaccaaataaattttgttatttttaatgaaaatatgtgtgtgtttt 37345671  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  37345672 ctataatacccttaatcatttattatttcattttatttttttctctctc 37345720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 40919005 - 40918859
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||    
T  40919005 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaaca--tgtgtgtttt 40918908  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  40918907 ctataatacccttaatcatttattatttcattttatttttttctctctc 40918859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 27034998 - 27035144
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||| |||    
T  27034998 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttatttttgatgaaattatgtctgtg-ttt 27035096  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  27035097 ctataatacccttaaccatttattatttcattctatttt-ttctctctc 27035144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 30999791 - 30999652
Alignment:
Q  181 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataa 280  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  30999791 tccgtttcaaaatacatgtcaattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 30999694  T
Q  281 tacccttaaccatttattatttcattttattttcttctctctc 323  Q
    ||||||||| ||||||||||||||||||||||| |||||||||    
T  30999693 tacccttaatcatttattatttcattttatttt-ttctctctc 30999652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 36068081 - 36068229
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||    
T  36068081 actccctccgtttcaaaatacatgtccattttggaggaattgtactaaccaaaaaaccaaataaattttgttatttttaatgaaaatatatgtgtgtttt 36068180  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| |||| |||||||||||||| ||| |||||||||    
T  36068181 ctataatacccttaatcattaattatttcattttacttttttctctctc 36068229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 175 - 320
Target Start/End: Complemental strand, 20546563 - 20546420
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||| |||||||||| |||||||||||| ||||||||||  || |||||||  ||||||||||||||||||||||||||| ||  ||||||||||    
T  20546563 actccctccatttcaaaatatatgtccattttgaagaaattgcaacaatcaagaaattaaataaattttgttatttttgatgaaatta--tgtgtgtttt 20546466  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctct 320  Q
     ||| ||||||||||| ||||||||||||||| |||||| ||||||    
T  20546465 atatgatacccttaacaatttattatttcattatatttttttctct 20546420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 8697950 - 8697898
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697950 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 8697898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 28562426 - 28562554
Alignment:
Q  179 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt-ta 277  Q
    ||||||||||||||||| ||||||||||| ||||||| ||   |||||| || ||||||||| |||| ||||||||||||| | | ||||| ||||| ||    
T  28562426 cctccgtttcaaaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttttttcta 28562525  T
Q  278 taatacccttaaccatttattatttcatt 306  Q
    |||||||||||  ||||||| ||||||||    
T  28562526 taatacccttactcatttatgatttcatt 28562554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 41308013 - 41307961
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41308013 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 41307961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 45278753 - 45278701
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278753 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 45278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 10646597 - 10646645
Alignment:
Q  179 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10646597 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 10646645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 13881174 - 13881094
Alignment:
Q  232 caaataaattttgttatttttgatgaaaatatgtgtgtgttttt-tataatacccttaaccatttattatttcattttatt 311  Q
    |||||||||||||||||||||||||||| | |||| || ||||| |||||||||||||| |||||||||||||||| ||||    
T  13881174 caaataaattttgttatttttgatgaaattgtgtgcgtttttttctataatacccttaatcatttattatttcattatatt 13881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 40486505 - 40486453
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40486505 actccctccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaag 40486453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 28326883 - 28326797
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||   ||||  ||||||| |||||| ||||||||||||||| ||||    
T  28326883 accaagaaatcaaataaattttgttatttttgatgaaattatgtgt---ttttcaataatactcttaactatttattatttcattctatt 28326797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 35866616 - 35866751
Alignment:
Q  176 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt 275  Q
    |||| ||||||||| ||||| ||||||||||  |||||||  |   |||||||||  | |||||| ||||||||||| |||||| | | ||||| ||||     
T  35866616 ctccttccgtttcacaatacttgtccattttaaagaaattatatataccaagaaattagataaatgttgttatttttcatgaaattctttgtgttttttc 35866715  T
Q  276 tataatacccttaaccatttattatttcattttatt 311  Q
    |||||||||||||| |||||||||||| ||| ||||    
T  35866716 tataatacccttaaacatttattattttattctatt 35866751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 10181074 - 10181002
Alignment:
Q  233 aaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcatt 306  Q
    |||||||||||||||||||| || ||| || || ||| |||||||||||||| |||||||||||||||||||||    
T  10181074 aaataaattttgttattttttataaaattacgtttgt-ttttttataataccgttaaccatttattatttcatt 10181002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 37510314 - 37510405
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatttt 313  Q
    |||||||||| |||||||||||||||||||| || ||| | | | | | ||||  ||||||||||||| |||||| ||||||||||||||||    
T  37510314 accaagaaactaaataaattttgttatttttaataaaattctttctattttttcaataatacccttaatcatttaatatttcattttatttt 37510405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 28567924 - 28568051
Alignment:
Q  179 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt-ta 277  Q
    ||||||||||||||||| ||||||||||| ||||||| ||   |||||  || ||||||||| |||| |||||| |||||| | | ||||| ||||| ||    
T  28567924 cctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttcta 28568023  T
Q  278 taatacccttaaccatttattatttcatt 306  Q
    |||||||||   | |||||||||||||||    
T  28568024 taataccctgctc-atttattatttcatt 28568051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 28575517 - 28575644
Alignment:
Q  179 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt-ta 277  Q
    ||||||||||||||||| ||||||||||| ||||||| ||   |||||  || ||||||||| |||| |||||| |||||| | | ||||| ||||| ||    
T  28575517 cctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttcta 28575616  T
Q  278 taatacccttaaccatttattatttcatt 306  Q
    |||||||||   | |||||||||||||||    
T  28575617 taataccctgctc-atttattatttcatt 28575644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 27564075 - 27563999
Alignment:
Q  225 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttc 303  Q
    |||||| ||||||| ||||||||||||| |||| | ||||||| | |||||||||| ||||||||| ||||||||||||    
T  27564075 aagaaatcaaataatttttgttattttt-atgagattatgtgttt-ttttttataacacccttaacaatttattatttc 27563999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 30906917 - 30906828
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt--tataatacccttaaccatttattatttcattttatt 311  Q
    ||||||| ||||||||||||||||||||| |||||| | |||| || |||||  ||| | | ||||||||||||||||||| ||| ||||    
T  30906917 caagaaatcaaataaattttgttattttttatgaaattttgtgagttttttttctatgaaaaccttaaccatttattatttaattctatt 30906828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 41305763 - 41305803
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  41305763 actctctccgtttcaaaatacatgtccattttagagaaatt 41305803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16890256 - 16890292
Alignment:
Q  1 aatgtaacttttgaaatatttttacaaatataccctc 37  Q
    ||||||||||||  |||||||||||||||||||||||    
T  16890256 aatgtaactttttgaatatttttacaaatataccctc 16890292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 45278021 - 45278053
Alignment:
Q  183 cgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||| ||||||||    
T  45278021 cgtttcaaaatacatgtccattttagagaaatt 45278053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 29260193 - 29260341
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29260193 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 29260292  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  29260293 ctataatacccttaatcatttattatttcattttatttttttctctctc 29260341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 1605580 - 1605727
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605580 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 1605679  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  1605680 ctataatacccttaatcatttattatttcattttatttt-ttctctctc 1605727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 8626483 - 8626631
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8626483 actccctccgtttcaaaatacatgtccattttgaagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 8626582  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  8626583 ctataatacccttaatcatttattatttcattttatttttttctctctc 8626631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 30734753 - 30734611
Alignment:
Q  181 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataa 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30734753 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 30734654  T
Q  281 tacccttaaccatttattatttcattttattttcttctctctc 323  Q
    ||||||||| ||||||||||||||||||||||| |||||||||    
T  30734653 tacccttaatcatttattatttcattttatttttttctctctc 30734611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 13757209 - 13757356
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13757209 actctctccgtttcaaaatacatgtccattttggagaaattacactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 13757308  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| || |||||||||||||||||||| |||||||||    
T  13757309 ctataatacccttaatcaattattatttcattttatttt-ttctctctc 13757356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 15064970 - 15064823
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15064970 actccctccgtttcaaaatacatgtccattttagagaaattgcagcaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgtttt 15064871  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
    ||||| |||||||||||||||||||||| ||| |||||| |||||||||    
T  15064870 ttatactacccttaaccatttattatttgattatatttt-ttctctctc 15064823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 7761302 - 7761438
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||  ||||||||||    
T  7761302 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaataaattttgttatttttgatgaaaata--tgtgtgtttt 7761399  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     |||||||||||||| |||||||||||||||||||||||    
T  7761400 ctataatacccttaatcatttattatttcattttatttt 7761438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 4129436 - 4129576
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||||    
T  4129436 actccctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgtttt 4129527  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||    
T  4129528 ctataatacccttaaccatttattatttcattttatttttttctctctc 4129576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 17942444 - 17942593
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgtt--atttttgatgaaaatatgtgtgtgtt 272  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||| ||  ||||||||||||| |||||| |||||    
T  17942444 actcccttcgtttcaaaatacatgtccatttttgagaaattgcagtaaccaagaaaccaaatatttttttttttatttttgatgaaattatgtgcgtgtt 17942543  T
Q  273 ttttataatacccttaaccatttattatttcattttattttcttctctct 322  Q
     | |||||||||||||||||||||||||||||||||||||| ||||||||    
T  17942544 ctctataatacccttaaccatttattatttcattttatttttttctctct 17942593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 189 - 322
Target Start/End: Complemental strand, 31559998 - 31559865
Alignment:
Q  189 aaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataataccctta 288  Q
    |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| | |||||||||||    
T  31559998 aaaatacatgtccattttggagaaattgcattaaccaaaaaatcaaataaattttgttatttttgatgaaaatatgtgtatgttttctgtaataccctta 31559899  T
Q  289 accatttattatttcattttattttcttctctct 322  Q
    | |||||||||||||||||| ||||  |||||||    
T  31559898 atcatttattatttcattttttttttctctctct 31559865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 8235625 - 8235763
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||  ||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||| |||| | ||||||||||||||    
T  8235625 actccctctattttaaaatacatgtacattttgaagaaattgcagtaaccaagaaacgaaataaaatttgttattttttatgatattatgtgtgtgtttt 8235724  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     |||||||||||||| |||||||||||||||| ||||||    
T  8235725 ctataatacccttaatcatttattatttcattctatttt 8235763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 30734879 - 30734771
Alignment:
Q  180 ctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttata 279  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||| ||  |||||||||| ||||    
T  30734879 ctccgtttcaaaatacatgtccattttgaagaaattgcagtaacaaaaaaatcaaataaattttgttatttttgatgaaatta--tgtgtgttttctata 30734782  T
Q  280 atacccttaac 290  Q
    |||||||||||    
T  30734781 atacccttaac 30734771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 19996767 - 19996715
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19996767 actccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 19996715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 11370711 - 11370630
Alignment:
Q  225 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcatt 306  Q
    |||||| |||||||||||||||||||||||||| | |   ||||| ||||||||||||| ||||||||||||||||| ||||    
T  11370711 aagaaatcaaataaattttgttatttttgatgatattcattgtgttttttttataatactcttaaccatttattattccatt 11370630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 14287038 - 14287125
Alignment:
Q  223 ccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    |||| ||| ||||||||||||||||||||| |||||| | ||||  | |||| ||||||||||||| || |||||||||||||||||||    
T  14287038 ccaataaatcaaataaattttgttattttttatgaaattctgtgctt-ttttctataatacccttacccctttattatttcattttatt 14287125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 3798151 - 3798233
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttca 304  Q
    ||||| ||| ||||||||||||||||||||| |||||  ||| ||||| |||| ||||| |||||||  ||||||||||||||    
T  3798151 accaaaaaatcaaataaattttgttatttttcatgaagttatttgtgttttttctataacacccttacacatttattatttca 3798233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 311
Target Start/End: Complemental strand, 21277659 - 21277574
Alignment:
Q  225 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||| |||| ||||||||||||||  ||||| || |||||| ||||    
T  21277659 aagaaatcaaataaattttgttattttttatgaaaatttatgtgt-ttttctataatacccttaattatttagtacttcattctatt 21277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 19996323 - 19996363
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  19996323 actccctccgtttcaaaatacatgtccattttagagaaatt 19996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 15064696 - 15064733
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaa 212  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  15064696 actccctccgtttcataatacttgtccattttggagaa 15064733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 17942719 - 17942682
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaa 212  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  17942719 actccctccgtttcataatacttgtccattttggagaa 17942682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 33845502 - 33845469
Alignment:
Q  232 caaataaattttgttatttttgatgaaaatatgt 265  Q
    |||||||||||||||||||||||||||| |||||    
T  33845502 caaataaattttgttatttttgatgaaattatgt 33845469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 30720768 - 30720620
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30720768 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 30720669  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  30720668 ttataatacccttaatcatctattatttcattttatttttttctctctc 30720620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 12807129 - 12806981
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12807129 actccctccgtttcaaaatacatgtccattttggagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 12807030  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| | |||||||    
T  12807029 ctataatacccttaatcatttattatttcattttattttttcctctctc 12806981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 25773650 - 25773788
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25773650 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 25773749  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     |||||||||||||| |||||||||||||||||||||||    
T  25773750 ctataatacccttaatcatttattatttcattttatttt 25773788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 10285333 - 10285185
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10285333 actccctccgtttcaaaatagatgtctattttggagaaattgcattaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 10285234  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  10285233 ctataatacccttaatcatttattatttcattttatttttttctctctc 10285185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 36561375 - 36561227
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36561375 actccatccgtttcaaaatacatgtccattttagaaaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 36561276  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  36561275 ctataatacctttaaccatttattatttcattttatttttttctctctc 36561227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 40886886 - 40886738
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  40886886 actccatccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcgaataaattttgttatttttgatgaaaatatgtgtgtatttt 40886787  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  40886786 ctataatacccttaatcatttattatttcattttatttttttctctctc 40886738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 175 - 313
Target Start/End: Complemental strand, 37900900 - 37900762
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||    
T  37900900 actccctccgtttcaaaatacacatccattttggagaaattgcagtaaccaagaaactaaataaattttgatatttttgatgaaattatatgtgtgtttt 37900801  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     ||||||||||||||||||||||||||||||| ||||||    
T  37900800 ctataatacccttaaccatttattatttcattctatttt 37900762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 7277688 - 7277560
Alignment:
Q  185 tttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacc 284  Q
    |||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  7277688 tttcaaaatacatgtctattttggagaaattggagtaaccaataaaccaaataaattttgttatttttgatcaaattatgtgtgtgttttctataatacc 7277589  T
Q  285 cttaaccatttattatttcattttatttt 313  Q
     ||||||||||||||||||||| ||||||    
T  7277588 tttaaccatttattatttcattatatttt 7277560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 25683467 - 25683357
Alignment:
Q  212 aattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  25683467 aattgcaataaccaagaaaccaaataaattttgttatttttgataaaattatgtgtgtgttttctataatacccttaaccatttattattttattctatt 25683368  T
Q  312 ttcttctctctc 323  Q
    || |||||||||    
T  25683367 tt-ttctctctc 25683357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 16983259 - 16983407
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataa--attttgttatttttgatgaaaatatgtgtgtgtt 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| || ||||||||||||  || ||||| ||    
T  16983259 actccctctgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttttttttttgatgaaatgatatgtgtttt 16983358  T
Q  273 ttttataatacccttaaccatttattatttcattttattttcttctctct 322  Q
    || || |||||||||||||| ||||||||| |||||  ||| ||||||||    
T  16983359 ttctacaatacccttaacca-ttattattttatttttattttttctctct 16983407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 30403191 - 30403101
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt-tataatacccttaaccatttattatttcattttatt 311  Q
    |||||||||||||||||||||||||||||||||||||| | ||||| | ||||| |||||||| ||||| ||||| |||||||||||||||    
T  30403191 accaagaaaccaaataaattttgttatttttgatgaaattctgtgtttttttttctataatactcttaatcatttgttatttcattttatt 30403101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 2225637 - 2225574
Alignment:
Q  104 gaaaagtcttttaaacaataatgtcgccttaaatgttgtgatgttttcttgtgtttaagatcaa 167  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  2225637 gaaaagtcttttaaacaatcatgtcaccttaaatgttgtgatgttttcttatgtttaagatcaa 2225574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 23098461 - 23098386
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttatta 299  Q
    |||||||| ||||||||||||||||||||||||||| ||||||  |||||  ||||||||||||||||||||||||    
T  23098461 caagaaactaaataaattttgttatttttgatgaaattatgtgcatgtttcctataatacccttaaccatttatta 23098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 15305264 - 15305216
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15305264 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaac 15305216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 311
Target Start/End: Complemental strand, 734611 - 734478
Alignment:
Q  177 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttttt 276  Q
    ||||||||||||| ||||| ||||||||||| ||||||| |    |||||  || |||||||||||||| ||| ||||||||| | | ||||| |||| |    
T  734611 tccctccgtttcacaatacttgtccattttgaagaaattactcataccaaagaatcaaataaattttgtcattattgatgaaattctttgtgt-ttttct 734513  T
Q  277 ataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||||||  |||||||||||||||| ||||    
T  734512 ataatacccttactcatttattatttcattctatt 734478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 39070884 - 39071020
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt-gtgtgttt 273  Q
    ||||||||||||||| ||||| ||| ||||||| ||||||| ||   |  ||| || ||||||||| |||| ||||||||||||| | ||| |||| |||    
T  39070884 actccctccgtttcacaatacttgttcattttgaagaaattacacatattaaggaatcaaataaatgttgtcatttttgatgaaa-tctgttgtgttttt 39070982  T
Q  274 tttataatacccttaaccatttattatttcattttatt 311  Q
    | |||||||||||||  |||||||||||||||| ||||    
T  39070983 tctataatacccttactcatttattatttcattctatt 39071020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 311
Target Start/End: Original strand, 11319564 - 11319696
Alignment:
Q  179 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttat 278  Q
    ||||||||||| ||||  ||||||||||| ||||||| ||   || ||  || ||||||||| |||| |||||| |||||| | | ||| | |||| |||    
T  11319564 cctccgtttcacaatatttgtccattttgaagaaattacacatactaatgaatcaaataaatgttgtaattttttatgaaattctttgttttttttctat 11319663  T
Q  279 aatacccttaaccatttattatttcattttatt 311  Q
    ||||||||||  |||||||||||||||| ||||    
T  11319664 aatacccttactcatttattatttcattctatt 11319696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 11796452 - 11796536
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaa 259  Q
    ||||||||| ||||| | ||| ||||  ||||| ||||||| |||  |||||||||  |||| ||||||||||||||||||||||    
T  11796452 actccctccttttcacactacttgtcatttttgaagaaattacagataccaagaaattaaattaattttgttatttttgatgaaa 11796536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 15304823 - 15304863
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  15304823 actccctccgttttaaaatacatgtccattttagagaaatt 15304863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 2225738 - 2225707
Alignment:
Q  3 tgtaacttttgaaatatttttacaaatatacc 34  Q
    ||||||||||||||||||||||||||||||||    
T  2225738 tgtaacttttgaaatatttttacaaatatacc 2225707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 16054173 - 16054249
Alignment:
Q  233 aaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    |||||||||||||||||||| ||||||   | ||||| |||| ||||||| |||| |||||||||||||| ||| ||||    
T  16054173 aaataaattttgttattttttatgaaa--ttttgtgttttttctataatatccttgaccatttattattttattctatt 16054249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 1056498 - 1056422
Alignment:
Q  234 aataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||||||||||||| |||||| | | ||||| |||| ||||||||  || | |||||||||||||||| ||||    
T  1056498 aataaattttgttatttttaatgaaattctttgtgt-ttttctataatactattgatcatttattatttcattatatt 1056422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 3257300 - 3257349
Alignment:
Q  104 gaaaagtcttttaaacaataatgtcgccttaaatgttgtgatgttttctt 153  Q
    |||||||||||||||||||| |  ||||||||| |||||||| |||||||    
T  3257300 gaaaagtcttttaaacaatagttacgccttaaaagttgtgatattttctt 3257349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 25683230 - 25683267
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaa 212  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  25683230 actccctccgtttcataatacttgtccattttggagaa 25683267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 23045555 - 23045407
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23045555 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 23045456  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23045455 ctataatacccttaatcatttattatttcattttatttttttctctctc 23045407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 40783933 - 40783785
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40783933 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 40783834  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  40783833 ctataatacccttaatcatttattatttcattttatttttttctctctc 40783785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 284334 - 284482
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  284334 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 284433  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||| |||  ||||||||    
T  284434 ctataatacccttaatcatttattatttcattttacttttctctctctc 284482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 321627 - 321775
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  321627 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 321726  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||| |||||| ||||||||||||||||||||||| || ||||||    
T  321727 ctataatatccttaatcatttattatttcattttatttttttttctctc 321775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 23526241 - 23526379
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23526241 actccttccatttcaaaatacatgttcattttggagaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgtttt 23526340  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     ||||||||||||||||||||||||||||||| ||||||    
T  23526341 ctataatacccttaaccatttattatttcattctatttt 23526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 175 - 313
Target Start/End: Complemental strand, 24772181 - 24772043
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  24772181 actccctccgtttcaaaatacatgtccattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtatttt 24772082  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     ||||||||||||||||||||||||||| ||| ||||||    
T  24772081 ctataatacccttaaccatttattattttattctatttt 24772043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 175 - 313
Target Start/End: Complemental strand, 27211240 - 27211102
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  27211240 actccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaccaaataaattttgttatttttgaggaaattatatgtgtgtttt 27211141  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     ||||||||||||||||||||||||||| ||| ||||||    
T  27211140 ctataatacccttaaccatttattattttattctatttt 27211102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 181 - 313
Target Start/End: Original strand, 46771644 - 46771776
Alignment:
Q  181 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||    
T  46771644 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaattaaataaattttgttatttttgatgaaattatgtgtgtgttttctataa 46771743  T
Q  281 tacccttaaccatttattatttcattttatttt 313  Q
    |||||||||||||||||| ||||||| ||||||    
T  46771744 tacccttaaccatttattttttcattctatttt 46771776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 47038126 - 47037980
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  47038126 actccatccgtttcaaaatacatgtccattttggagaaattgtactaactaagaaatcaaataaattttgttatttttgatgaaaatatgt--gtgtttt 47038029  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  47038028 ctataatacccttaatcatttattatttcattttatttttttctctctc 47037980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 33082765 - 33082884
Alignment:
Q  194 acatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccat 293  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  33082765 acatgtctattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccat 33082864  T
Q  294 ttattatttcattttatttt 313  Q
    ||||||||| ||| ||||||    
T  33082865 ttattattttattctatttt 33082884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 189 - 322
Target Start/End: Complemental strand, 52037382 - 52037252
Alignment:
Q  189 aaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataataccctta 288  Q
    |||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||||||||| ||| ||  |||||||||| |||||||| ||||    
T  52037382 aaaatacatgtccattttagagaaattgcattatccaaaaaaccaaataaattttattatttttgataaaatta--tgtgtgttttctataatactctta 52037285  T
Q  289 accatttattatttcattttattttcttctctct 322  Q
    |||||||||||||||||| |||||| ||||||||    
T  52037284 accatttattatttcattctatttt-ttctctct 52037252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 322
Target Start/End: Original strand, 1749314 - 1749455
Alignment:
Q  181 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataa 280  Q
    ||||||| ||||||||| |||||||   | ||||  |||||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  1749314 tccgttttaaaatacatttccatttaaaaaaaatcacagtaatcaagaaatcaaataaattttgttatttttgatgaaattatatgtgtgttttctataa 1749413  T
Q  281 tacccttaaccatttattatttcattttattttcttctctct 322  Q
    || | ||||||||||||||||| ||| ||||||  |||||||    
T  1749414 tagcattaaccatttattattttattctatttttctctctct 1749455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 3943061 - 3943113
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943061 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 3943113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 9588671 - 9588723
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9588671 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 9588723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 13985043 - 13984991
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13985043 actccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 13984991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 41959079 - 41959131
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41959079 actccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaag 41959131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 1838053 - 1837978
Alignment:
Q  225 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattattt 302  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||| |||| ||||||||||||| |||||||||||||    
T  1838053 aagaaatcaaataaattttgttatttttgatgaaatta--tgtgttttttctataatacccttacccatttattattt 1837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 7765072 - 7765154
Alignment:
Q  233 aaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttattttct 315  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||   |||||||| |||||||||||||||| ||||| ||||||    
T  7765072 aaataaattttgttatttttggtgaaattatatgtgtgttttccgtaatacccataaccatttattatttaatttttttttct 7765154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 31004012 - 31003926
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||| ||||||||||||   |||||| |||||| ||||||| | |||| ||||||||||||||||||||||||||| ||| ||||    
T  31004012 accaagaaatcaaataaatttt---atttttaatgaaagtatgtgtattttttctataatacccttaaccatttattatttaattctatt 31003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 3657125 - 3657199
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccattta 296  Q
    ||||||||| ||||||||||||||||||||| |||||| | ||| ||| |||| ||||||| |||||||||||||    
T  3657125 accaagaaatcaaataaattttgttatttttaatgaaattttgtatgttttttctataataaccttaaccattta 3657199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 40261501 - 40261419
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt-tataatacccttaaccatttattatttc 303  Q
    ||||||||| |||||||||||||||| ||||||||||| |  |||||| ||||| ||||||| | ||||||||||||||||||    
T  40261501 accaagaaatcaaataaattttgttaattttgatgaaattgcgtgtgtttttttctataatatcattaaccatttattatttc 40261419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 51065032 - 51064893
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||| ||||| ||||||||||  ||||||| ||   |||||| || ||||||||| |||| ||||||||||||| | | ||||| ||||    
T  51065032 actccctccgtttcacaatacttgtccattttaaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttttt 51064933  T
Q  275 ---ttataatacccttaaccatttattatttcattttatt 311  Q
       | ||||||||||||  | |||||||||||||| ||||    
T  51064932 ctataataatacccttactcgtttattatttcattatatt 51064893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 40564293 - 40564241
Alignment:
Q  188 caaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaat 240  Q
    ||||||| |||||||||||||| |||| |||||||||||||||||||||||||    
T  40564293 caaaatatatgtccattttggaaaaatcgcagtaaccaagaaaccaaataaat 40564241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 44227849 - 44227889
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44227849 actccctccgtttcaaaatacatgtccattttggagaaatt 44227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 44228276 - 44228228
Alignment:
Q  179 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  44228276 cctccatttcaaaatacatgtccattttggagaaattgctgtaaccaag 44228228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 18396754 - 18396832
Alignment:
Q  233 aaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    |||||||||||||||||||| |||||| ||||||||  |||| |||||||   ||||||||| ||||||||||| ||||    
T  18396754 aaataaattttgttattttttatgaaattatgtgtggtttttctataatatatttaaccattcattatttcattctatt 18396832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 52478016 - 52478103
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||| ||||||||||||||||||||||||||||   | ||||| |||| ||||||| ||||||  |||||| |||||||| ||||    
T  52478016 accaagaaatcaaataaattttgttatttttgatgaaa--ttttgtgttttttctataataaccttaaaaatttatcatttcattctatt 52478103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 31061662 - 31061594
Alignment:
Q  242 ttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||||||| |||||| ||||||||| ||||  ||||||||| |||||||||||||||||||| ||||    
T  31061662 ttgttattttttatgaaattatgtgtgttttttccataataccc-taaccatttattatttcattatatt 31061594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 40562797 - 40562733
Alignment:
Q  234 aataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttatta 299  Q
    |||||||||||||||||||||| ||| ||| | |||||||| ||||||||| ||||||||||||||    
T  40562797 aataaattttgttatttttgat-aaattatatatgtgttttctataataccattaaccatttatta 40562733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 3943803 - 3943763
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  3943803 actccctccgtttcaaaatacatgtccattttagagaaatt 3943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 27143239 - 27143151
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt-tataatacccttaaccatttattatttcattttatt 311  Q
    ||||||| ||||||||||||||||||||||| |||| |  ||| || ||||| |||||||  ||||| |||||||||||||||| ||||    
T  27143239 caagaaatcaaataaattttgttatttttgaggaaattccgtgagtttttttctataatattcttaatcatttattatttcattctatt 27143151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 41959849 - 41959809
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  41959849 actccctccgtttcaaaatacatgtccattttagagaaatt 41959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 1168369 - 1168414
Alignment:
Q  182 ccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||    
T  1168369 ccgtttcaaaatacatgtcgtttttgaagaaattgcagtaaccaag 1168414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 9589671 - 9589631
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  9589671 actccctccgtttcaaaatacatgtctattttagagaaatt 9589631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 14351989 - 14351954
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatga 257  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14351989 accaagaaaacaaataaattttgttatttttgatga 14351954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 175 - 27
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  175 actctctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 76  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  75 ctataatacccttaatcatttattatttcattttatttttttctctctc 27  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 10981509 - 10981657
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10981509 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 10981608  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| |||||||||||||||||||||||  ||||||||    
T  10981609 ctataatacccttaatcatttattatttcattttatttttctctctctc 10981657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 27813812 - 27813960
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27813812 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtatgtgtttt 27813911  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  27813912 ctataatacccttaatcatttattatttcattttatttttttctctctc 27813960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 176 - 323
Target Start/End: Complemental strand, 36453399 - 36453252
Alignment:
Q  176 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||     
T  36453399 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgttttttc 36453300  T
Q  276 tataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  36453299 tataatacccttaatcatttattatttcattttatttttttctctctc 36453252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 40348961 - 40349109
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40348961 actccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 40349060  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| |||||||||||||||||||||||  ||||||||    
T  40349061 ctataatacccttaatcatttattatttcattttatttttctctctctc 40349109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 25614627 - 25614481
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||    
T  25614627 actccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgt--gtgtttt 25614530  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |  ||||||||||| ||||||||||||||||||||||| |||||||||    
T  25614529 ctgaaatacccttaatcatttattatttcattttatttttttctctctc 25614481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 47110452 - 47110588
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||  ||||||||||    
T  47110452 actccctccatttcaaaatacatgtccattttggagaaattgcactaaccaagaaacaaaataaattttgttatttttgatgaaaata--tgtgtgtttt 47110549  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     |||||||||||||| |||||||||||| ||||||||||    
T  47110550 ctataatacccttaatcatttattattttattttatttt 47110588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 3091565 - 3091649
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcatt 306  Q
    ||||| ||| |||||||||||||||||||||||||||| | | ||||| |||| |||||||||||||||||||||||||||||||    
T  3091565 accaaaaaatcaaataaattttgttatttttgatgaaattctttgtgttttttctataatacccttaaccatttattatttcatt 3091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 16662146 - 16662231
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    |||||||  ||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||| ||| ||||    
T  16662146 caagaaataaaataaattttgttatttttgatgaaaatttgtgttt--tttttataatacccttaaccatttattattttattatatt 16662231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 17636506 - 17636591
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    |||||||  ||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||| ||| ||||    
T  17636506 caagaaataaaataaattttgttatttttgatgaaaatttgtgttt--tttttataatacccttaaccatttattattttattatatt 17636591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 25060185 - 25060133
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25060185 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 25060133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 2911600 - 2911548
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2911600 actccctccatttcaaaatacatgtccattttggagaaattgcagtaaccaag 2911548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 27942256 - 27942177
Alignment:
Q  234 aataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatttt 313  Q
    |||||||||| |||||||| |||| | ||||||||| |||| ||||||||| ||||||||||||||||||||| ||||||    
T  27942256 aataaatttttttatttttaatgagattatgtgtgttttttctataatacctttaaccatttattatttcattctatttt 27942177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 37983206 - 37983289
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||| |||||||||||||||||||||||||||| | | |||    ||||||||||||| ||||||||||||||||||||| ||||    
T  37983206 caagaaatcaaataaattttgttatttttgatgaaattttatgt----tttttataatacctttaaccatttattatttcattatatt 37983289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 16360442 - 16360511
Alignment:
Q  232 caaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttc 303  Q
    |||||||||||||||||||||||||||| | ||||| |  ||| ||||||||||||||||||||||||||||    
T  16360442 caaataaattttgttatttttgatgaaattctgtgttt--tttctataatacccttaaccatttattatttc 16360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 3498973 - 3498884
Alignment:
Q  232 caaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttattttcttctctct 322  Q
    ||||| ||||||||||||||| |||||| | | ||| | |||| ||||||||  |||||||||||||||||||||||||||| ||||||||    
T  3498973 caaattaattttgttattttttatgaaattttttgtatcttttctataatacttttaaccatttattatttcattttatttt-ttctctct 3498884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 7743625 - 7743542
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcatt 306  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||| |  ||| ||||||||| ||||  |||||||||||||||    
T  7743625 accaagatatcaaataaattttgttatttttgatgaaattatgtgt-ttctttctataataccgttaattatttattatttcatt 7743542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20949232 - 20949196
Alignment:
Q  1 aatgtaacttttgaaatatttttacaaatataccctc 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  20949232 aatgtaactttttaaatatttttacaaatataccctc 20949196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 25059456 - 25059491
Alignment:
Q  180 ctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25059456 ctccgtttcaaaatacatgtccattttagagaaatt 25059491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 2910860 - 2910900
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||||| |||||  |||||||    
T  2910860 actccctccgtttcaaaatacatgtctattttaaagaaatt 2910900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 3383077 - 3383225
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3383077 actccttccgtttcaaaatatatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 3383176  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  3383177 ctataatacccttaaacatttattatttcattttatttttttctctctc 3383225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 13364844 - 13364992
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13364844 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 13364943  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  13364944 ctataatacccttaatcatttattatttcattttatttttttctctctc 13364992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 198856 - 199004
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  198856 actccctccgtttcaaaatacatgtccattttggagaaattgcactgaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 198955  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  198956 ctataatacccttaatcatttattatttcattttatttttttctctctc 199004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 46694386 - 46694238
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46694386 actccctccgtttcaaaatacatgtcctttttggagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 46694287  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  46694286 ctataatacccttaatcatttattatttcattttatttttttctctctc 46694238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 29375139 - 29375277
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29375139 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttcttatttttgatgaaaatatgtgtgtgtttt 29375238  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     |||||||||||||||||||||||||||| |||| ||||    
T  29375239 ctataatacccttaaccatttattatttctttttttttt 29375277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 19241944 - 19241796
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19241944 actccctccgtttcaaaatacatgtccattttggtgaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 19241845  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  19241844 ctataatacccttaatcatttattatttcattttacttttttctctctc 19241796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 36881283 - 36881429
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  36881283 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgtttt 36881380  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     ||||||||||||||  |||||||||||||||||||||| |||||||||    
T  36881381 ctataatacccttaattatttattatttcattttatttttttctctctc 36881429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 23088207 - 23088059
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||| ||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23088207 actccctctgtttcaaaatatatgtctattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 23088108  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23088107 ctataatacccttaatcatttattatttcattttatttttttctctctc 23088059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 43750138 - 43750285
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  43750138 actcccttcgtttcaaaatacatgtccattttggagaaattggagtaaccaagaaaccaaataaattttgttatttttgatgaaattatatgtgtgtttt 43750237  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||| |||||||||||||||||||||| |||||| |||||||||    
T  43750238 ctataatacacttaaccatttattatttcattctatttt-ttctctctc 43750285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 32835226 - 32835133
Alignment:
Q  181 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  32835226 tccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaacaaataaattttgttatttttgatgaaattatgtgtgtgtttt 32835133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 13702770 - 13702890
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||| ||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||    
T  13702770 actccatccattttaaaatacatgcctattttggagaaattgcagtaaccaagaaaccaaataaattttgatatttttgatgaaattatatgtttgtttt 13702869  T
Q  275 ttataatacccttaaccattt 295  Q
     ||||||||| ||||||||||    
T  13702870 ctataatacctttaaccattt 13702890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 27707440 - 27707363
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttattttt 252  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27707440 actccctccgtttcgaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttattttt 27707363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 12094583 - 12094635
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12094583 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 12094635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 19911510 - 19911562
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19911510 actccctccgtttcaaaatacatgttcattttggagaaattgcagtaaccaag 19911562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 44277507 - 44277455
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44277507 actccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 44277455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 37780996 - 37781069
Alignment:
Q  233 aaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcatt 306  Q
    ||||||||||| ||||||||||||||| | ||||||| |||| ||||||||  |||||||||||||||||||||    
T  37780996 aaataaattttattatttttgatgaaattctgtgtgttttttctataatactattaaccatttattatttcatt 37781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 38805246 - 38805298
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  38805246 actccctccgttttaaaatacatgtccattttagagaaattgcagtaaccaag 38805298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 48820512 - 48820444
Alignment:
Q  191 aatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaa 259  Q
    |||||||||  |||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||    
T  48820512 aatacatgtttattttggagaaattacggtatccaataaaccaaataaattttgttatttttgatgaaa 48820444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 26105079 - 26105180
Alignment:
Q  222 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttttt-ataatacccttaaccatttattatttcattttattttcttctct 320  Q
    ||||| ||| ||||||||||||||||||||| ||||   | | | |||||||||| | |||||||||||||||||||||||||||| |||||| ||||||    
T  26105079 accaataaatcaaataaattttgttatttttaatgatttttttt-tgtgtttttttacaatacccttaaccatttattatttcattatatttttttctct 26105177  T
Q  321 ctc 323  Q
    |||    
T  26105178 ctc 26105180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 19897152 - 19897067
Alignment:
Q  226 agaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||| ||||||||||||||||||||| |||||| | | ||||| |||| |||||||||||||  | |||||||||||||| ||||    
T  19897152 agaaatcaaataaattttgttattttttatgaaattctttgtgttttttctataatacccttactcttttattatttcattctatt 19897067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 37293438 - 37293522
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaa 259  Q
    ||||||||||||||| ||||| ||||||||||| ||||||| ||   |||||| || ||||||||| |||| |||||||||||||    
T  37293438 actccctccgtttcacaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaa 37293522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 53559837 - 53559750
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||| ||||||||| |||||||||||||||||| | | ||||| || ||||  ||| ||||| || |||||||||||||||||||    
T  53559837 caagaaaacaaataaatgttgttatttttgatgaaattctctgtgttttatttacgatatccttacccgtttattatttcattttatt 53559750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 27707177 - 27707119
Alignment:
Q  262 atgtgtgtgttttttataatacccttaaccatttattatttcattttattttcttctct 320  Q
    |||| |||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||    
T  27707177 atgtatgtgttttctataatatccttaaccatttattatttctttttatttttttctct 27707119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 1455374 - 1455297
Alignment:
Q  225 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattattt 302  Q
    |||||| |||||||||||||||||||||||| ||| ||| ||||| | || |||||| | ||| ||||||||||||||    
T  1455374 aagaaatcaaataaattttgttatttttgataaaattatttgtgtttcttctataattctcttcaccatttattattt 1455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 48963157 - 48963223
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaatttt 243  Q
    ||||||||||||||||||||||| || ||||||||||||||||  ||||||| ||| ||||||| ||||    
T  48963157 actccctccgtttcaaaatacatatctattttggagaaattgc--taaccaataaatcaaataattttt 48963223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 19912214 - 19912174
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  19912214 actccctccgtttcaaaatacatgtccattttagagaaatt 19912174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 38806381 - 38806341
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  38806381 actccctccgtttcaaaatacatgtccattttagagaaatt 38806341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 4226716 - 4226759
Alignment:
Q  183 cgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  4226716 cgtttcaaaatacatgtcg-ttttggagaaattgcagtaaccaag 4226759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 12095463 - 12095423
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  12095463 actccctccgtttcaaaatatatgtccattttagagaaatt 12095423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 44276776 - 44276816
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  44276776 actctctccgtttcaaaatacatgtccattttagagaaatt 44276816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 44522491 - 44522567
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattattt 302  Q
    ||||||| |||||||||||| |||||||| ||||||  |  ||||| |||| ||||||||  |||||||||||||||||    
T  44522491 caagaaatcaaataaattttattattttttatgaaatca--tgtgttttttctataatacttttaaccatttattattt 44522567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 24064283 - 24064361
Alignment:
Q  233 aaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    |||||||||||||||| ||| || ||| |   ||||| |||| ||||||||||||| ||||||||||||| ||| ||||    
T  24064283 aaataaattttgttatattttataaaattcactgtgttttttctataatacccttacccatttattattttattctatt 24064361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 4235760 - 4235803
Alignment:
Q  183 cgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||    
T  4235760 cgtttcaaaatacatgtcg-ttttggagaaattgcactaaccaag 4235803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17003565 - 17003601
Alignment:
Q  1 aatgtaacttttgaaatatttttacaaatataccctc 37  Q
    ||||||||||||  |||||||||||||||||||||||    
T  17003565 aatgtaactttttgaatatttttacaaatataccctc 17003601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 48963219 - 48963259
Alignment:
Q  272 tttttataatacccttaaccatttattatttcattttattt 312  Q
    |||||||||||  |||||||||||||||||||||| |||||    
T  48963219 tttttataataatcttaaccatttattatttcattctattt 48963259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 45455 - 45593
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  45455 actccctccgtttcaaaatacatgttcattttggagaaattgcaccaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtatttt 45554  T
Q  275 ttataatacccttaaccatttattatttcattttatttt 313  Q
     ||||||||||||||||||||||||||| ||| ||||||    
T  45555 ctataatacccttaaccatttattattttattctatttt 45593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 171 - 311
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 274  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||||    
T  171 actccctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgtttt 262  T
Q  275 ttataatacccttaaccatttattatttcattttattttcttctctctc 323  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||    
T  263 ctataatacccttaaccatttattatttcattttatttttttctctctc 311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 189 - 322
Target Start/End: Complemental strand, 525 - 394
Alignment:
Q  189 aaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataataccctta 288  Q
    ||||||||||| |||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||    
T  525 aaaatacatgttcattttggcgaaattgcagtaatcaaaaaatcaaataaattttgttatttttgataaaatta--tgtgtgttttttataataccctta 428  T
Q  289 accatttattatttcattttattttcttctctct 322  Q
    | |||||||||||||||| ||||||  |||||||    
T  427 atcatttattatttcattctatttttctctctct 394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 70874 - 70961
Alignment:
Q  224 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaaccatttattatttcattttatt 311  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||| |||| | ||| ||||||||||||||||||||||||| ||||    
T  70874 caagaaatcaaataaattttgttatttttgatgaaattctgtgtgttttttctgtaacacccttaaccatttattatttcattctatt 70961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 23468 - 23520
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23468 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 23520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 23912 - 23872
Alignment:
Q  175 actccctccgtttcaaaatacatgtccattttggagaaatt 215  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  23912 actccatccgtttcaaaatacatgtccattttagagaaatt 23872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 65375 - 65301
Alignment:
Q  240 ttttgttatttttgatgaaaatatgtgtgtgttttt-tataatacccttaaccatttattatttcattttatttt 313  Q
    |||| ||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  65375 ttttattatttttgatgaaattatatgtgtttttttctataatacccttaaccatttattatttcattctatttt 65301  T

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