View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5000-Insertion-2 (Length: 530)
Name: NF5000-Insertion-2
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5000-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 204 - 458
Target Start/End: Complemental strand, 38441336 - 38441067
Alignment:
| Q |
204 |
ctcaacggcaaggggtgggttggaaggttgaggtagtaaagcaggatgtcatgttaagaagaaagatatggtactaaacagagtgttcaataaattgaaa |
303 |
Q |
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| T |
38441336 |
ctcaacggcaagggatgggttggaaggttgaggtagtaaagcaagatgtcatgttaagaagaaagatatggtactaaagaaagtgttcaataaattgaaa |
38441237 |
T |
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| Q |
304 |
atgagagtttctactttctagttatgaaaattacattttttattgcatcatgtgaatcaatcaaccgaaccaaatcaaaccagatatcattg-------- |
395 |
Q |
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| T |
38441236 |
atgagagtttctattttctagttatgaaaattacattttttattgcatcatgtgaatcaatcaaccgaaccaaatcaaaccagatatcattggttcagtt |
38441137 |
T |
|
| Q |
396 |
-------gttctacttttataaaatgatgaaaacaaaagcaaaccgaactgatgtagattttgtcggttt |
458 |
Q |
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| T |
38441136 |
tagtttggttctacttttaaaaaatgatgaaaacaaaagcaaaccgaactgatgtagattttgtcggttt |
38441067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 38441848 - 38441650
Alignment:
| Q |
8 |
gaagaaagttatatcaatctgtgtattgatatagtaagttccttgggctagtggaagatttagatttgtaatgatatttctatcatcaactcatagatat |
107 |
Q |
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| T |
38441848 |
gaagaaagttatatcaatctgtgtattgatatagtaagttccttgggctagtggaagatttagatttgtaatgatatttctatcatcaactcatagatat |
38441749 |
T |
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| Q |
108 |
tcttgatctttaagctcataaactgaggcgggatatcttggattatatcacaaagaggatgctctgagagccacatttggaaccagaaattagtatctc |
206 |
Q |
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| T |
38441748 |
tcttgatctttaagctcataaactgaggcgggatatcttggattatatcacaaagaggatgctctgagcgccacatttggaaccagaaattagtatctc |
38441650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 253 - 398
Target Start/End: Complemental strand, 38449689 - 38449543
Alignment:
| Q |
253 |
catgttaagaagaaagatatggtactaaacagagtgttcaataaattgaaaatgagagtttctactttctagttatgaaaattacatt--ttttattgca |
350 |
Q |
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|||||||||||| ||||| ||||||| | |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
38449689 |
catgttaagaaggcagatagggtactata-agagtgttgaatgaattgaaaatgagagtttctactttctaactatgaaaattacattttttttattgca |
38449591 |
T |
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| Q |
351 |
tcatgtgaatcaatcaaccgaaccaaatcaaaccagatatcattggtt |
398 |
Q |
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| T |
38449590 |
tcatgtgaatcaaccaatcagaccaaatcaaaccatatatcattggtt |
38449543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 26031316 - 26031439
Alignment:
| Q |
219 |
tgggttggaaggttgaggtagtaaagcaggatgtcatgttaagaagaaagatatggtactaaacagagtgttcaataaattgaaaatgagagtttctact |
318 |
Q |
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| T |
26031316 |
tgggttggaaggttgaggaagtgaagcaggatgtcatgttaagaaggcagataggttactaacgagagtgttgaa-gaattgaaaatgcgagtttctact |
26031414 |
T |
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| Q |
319 |
ttctagttatgaaaattacattttt |
343 |
Q |
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|||||||| |||||||||||||||| |
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| T |
26031415 |
ttctagttttgaaaattacattttt |
26031439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 467 - 530
Target Start/End: Complemental strand, 38440978 - 38440915
Alignment:
| Q |
467 |
tttggcgaccctttatcctcctttgtcaaattcattattttctaccccactttcttatcatcca |
530 |
Q |
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| T |
38440978 |
tttggcgaccctttatcctcctttgtcaaattctttattttctaccccactttcttatcatcca |
38440915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 318
Target Start/End: Original strand, 26036129 - 26036233
Alignment:
| Q |
213 |
aaggggtgggttggaaggttgaggtagtaaagcaggatgtcatgttaagaagaaagatatggtactaaacagagtgttcaataaattgaaaatgagagtt |
312 |
Q |
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||||| |||||||||||||||||| | | |||||||||| |||||||||||| ||||| |||||||| |||||||| || |||||||||||| ||||| |
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| T |
26036129 |
aagggatgggttggaaggttgaggaaatgaagcaggatgccatgttaagaaggcagataaggtactaacgagagtgttgaa-aaattgaaaatgtgagtt |
26036227 |
T |
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| Q |
313 |
tctact |
318 |
Q |
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|||||| |
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| T |
26036228 |
tctact |
26036233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 26031890 - 26031943
Alignment:
| Q |
50 |
ttgggctagtggaagatttagatttgtaatgatatttctatcatcaactcatag |
103 |
Q |
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| T |
26031890 |
ttggggtagtggaagatttagaattgtaatgagatttcaatcatcaactcatag |
26031943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 38449509 - 38449468
Alignment:
| Q |
417 |
gaaaacaaaagcaaaccgaactgatgtagattttgtcggttt |
458 |
Q |
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| T |
38449509 |
gaaaacaaaagcagactgaactgatggagattttgtcggttt |
38449468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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