View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5000_high_11 (Length: 241)

Name: NF5000_high_11
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5000_high_11
NF5000_high_11
[»] chr2 (6 HSPs)
chr2 (18-198)||(44686112-44686292)
chr2 (1-92)||(6489873-6489964)
chr2 (19-137)||(27648355-27648473)
chr2 (16-192)||(36338893-36339069)
chr2 (46-198)||(26690546-26690696)
chr2 (159-198)||(40813169-40813208)
[»] chr1 (3 HSPs)
chr1 (19-198)||(25588698-25588876)
chr1 (16-179)||(47833808-47833971)
chr1 (151-198)||(6055852-6055899)
[»] chr6 (4 HSPs)
chr6 (27-192)||(353016-353182)
chr6 (81-198)||(31405615-31405732)
chr6 (19-198)||(12273593-12273771)
chr6 (18-197)||(14802780-14802964)
[»] chr3 (4 HSPs)
chr3 (16-179)||(53837501-53837664)
chr3 (16-198)||(24734243-24734425)
chr3 (18-179)||(53833903-53834064)
chr3 (151-195)||(7909508-7909552)
[»] chr5 (4 HSPs)
chr5 (1-138)||(17895613-17895752)
chr5 (19-175)||(33827499-33827655)
chr5 (16-90)||(17895438-17895512)
chr5 (63-137)||(11128885-11128959)
[»] chr8 (2 HSPs)
chr8 (16-198)||(15051514-15051694)
chr8 (19-137)||(24542662-24542780)
[»] chr7 (2 HSPs)
chr7 (27-199)||(4648176-4648348)
chr7 (16-137)||(38787072-38787191)
[»] chr4 (1 HSPs)
chr4 (124-192)||(54572967-54573036)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 44686292 - 44686112
Alignment:
Q  18 ctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgt 117  Q
    |||||||| ||||||| || ||||||  ||||||| ||| |||||||||||||| ||||||| ||||| ||||||||||| |||||||||| |||||||     
T  44686292 ctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcggataacttatccga 44686193  T
Q  118 ggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttctattctctatttaattt 198  Q
    |||| |||||||||||||||| | || | ||  ||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  44686192 ggtggcgaaatactcttaagcccagtgcattttgcatgcctcagtcaataatcgagaagttttctattctctatttaattt 44686112  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 6489873 - 6489964
Alignment:
Q  1 agcatccaaaaatggttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagac 92  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  6489873 agcatccaaaaatggttttgagaccctgctaattcatgtgcggcgctagcaaaaggtgaccgttgtatcctcgagagtactagctgtgagac 6489964  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 27648355 - 27648473
Alignment:
Q  19 tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtg 118  Q
    ||||||| || |||| |||||||||  ||||||| ||| |||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||  |    
T  27648355 tgagaccttgttaatccatgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcggataatttatccaag 27648454  T
Q  119 gtgacgaaatactcttaag 137  Q
    ||| ||||||||| |||||    
T  27648455 gtggcgaaatacttttaag 27648473  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 36339069 - 36338893
Alignment:
Q  16 ttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatcc 115  Q
    |||||||||| | ||||||||  |||||  ||||||| || ||||||||||||||| ||||||||||||   |||| |||   |||||| |||  ||| |    
T  36339069 ttctgagaccttactaattcacatgcggtgctagcaagaactgactgttgtatcctggagagtactagccacgagatctactgcatcgggtaacctattc 36338970  T
Q  116 gtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttc-tattctctatt 192  Q
    | | || |||||||||||||| | | || ||| | |||||||| |||||||| ||||||||||| | |||||||||||    
T  36338969 gagatggcgaaatactcttaaac-cagtgcttcgtgcacgcctcagtcaatattcgataagtttacatattctctatt 36338893  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 198
Target Start/End: Complemental strand, 26690696 - 26690546
Alignment:
Q  46 ctagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtggtgacgaaatactcttaagctcggtac 145  Q
    |||||||||| ||| ||||||||  | ||||||||||||| ||||||| |   ||||||||||  ||||| |||||  ||||||||||||||  |  |      
T  26690696 ctagcaaaaaatgattgttgtattatagagagtactagctatgagaccaactgcatcggataacctatccatggtggtgaaatactcttaagtccaatgt 26690597  T
Q  146 tttgagcacgccttagtcaataatcgataagttttctattctctatttaattt 198  Q
     ||   ||||||| | ||||||||||||||||||| |||||| ||||||||||    
T  26690596 att--acacgcctcattcaataatcgataagttttttattctttatttaattt 26690546  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 40813169 - 40813208
Alignment:
Q  159 tagtcaataatcgataagttttctattctctatttaattt 198  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  40813169 tagtcaataatcaataagttttttattctctatttaattt 40813208  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 25588698 - 25588876
Alignment:
Q  19 tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtg 118  Q
    ||||||| |||||||||| ||||||  ||||||| ||||||| || |||| || ||||||||||||| ||||| ||| |  |||| ||||| ||| ||||    
T  25588698 tgagaccttgctaattcacgtgcggtgctagcaagaagtgaccgt-gtattctggagagtactagctatgagatctaccgtatcgaataatctattcgtg 25588796  T
Q  119 gtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttctattctctatttaattt 198  Q
    ||| ||||||||||||||||   ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||    
T  25588797 gtggcgaaatactcttaagcaaagtactatgtgcacaccttagtcaataatcgataagttttctattctctatttaattt 25588876  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 47833808 - 47833971
Alignment:
Q  16 ttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatcc 115  Q
    ||||||||||  | |||| || ||||||  ||||||| ||| ||||||||||| || ||||||| ||||| ||||||||||  |||||||| ||| ||||    
T  47833808 ttctgagacctcgttaatccacgtgcggtgctagcaagaagcgactgttgtattctggagagtattagctatgagacctattgcatcggatgattcatcc 47833907  T
Q  116 gtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttt 179  Q
    | |||| |||||||||||||||| |  | |||   ||| |||| ||||||||||||||||||||    
T  47833908 ggggtggcgaaatactcttaagcccaatgcttcatgcatgcctcagtcaataatcgataagttt 47833971  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 6055899 - 6055852
Alignment:
Q  151 gcacgccttagtcaataatcgataagttttctattctctatttaattt 198  Q
    |||| ||||||| |||||| ||||| ||||||||||||||||||||||    
T  6055899 gcacaccttagttaataatggataaattttctattctctatttaattt 6055852  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 353016 - 353182
Alignment:
Q  27 tgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtggtgacgaa 126  Q
    |||||||||| |||||  |||||||| |||||| | ||||||||| ||||||| ||||||||||||||||| ||||||||||| ||| || |||| ||||    
T  353016 tgctaattcacgtgcgatactagcaagaagtgattattgtatcctggagagtattagctgtgagacctatcgcatcggataatctattcggggtggcgaa 353115  T
Q  127 atactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttc-tattctctatt 192  Q
    |||||||||||| | || ||| | |||||||| |||||||||||||| ||||| | |||||||||||    
T  353116 atactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttacttattctctatt 353182  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 31405732 - 31405615
Alignment:
Q  81 tagctgtgagacctatcacatcggataatttatccgtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagtttt 180  Q
    ||||| |||||||||   ||||||||||| ||| ||  ||| ||||||||||||||||||  | | ||  ||||| || | |||||||||||||| ||||    
T  31405732 tagctatgagacctactgcatcggataatctattcggagtggcgaaatactcttaagctcaatgcattttgcacgtctcactcaataatcgataaatttt 31405633  T
Q  181 ctattctctatttaattt 198  Q
    ||||||||||||||||||    
T  31405632 ctattctctatttaattt 31405615  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 12273593 - 12273771
Alignment:
Q  19 tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtg 118  Q
    ||||||| ||||||||||  || ||  ||||||| |||||| |||||||||||  |||||| || || ||||||||||| ||| || | ||  ||||| |    
T  12273593 tgagaccttgctaattcacatgtggtgctagcaagaagtgattgttgtatcctaaagagtattaactatgagacctatcgcattgggtgatccatccggg 12273692  T
Q  119 gtgacgaaatactcttaagctcggtactttgagcacgccttagtcaata--atcgataagttttctattctctatttaattt 198  Q
     || | |||||||||||||| |||| | ||  |||||||| | ||||||  ||||||||| |||||||||||||||||||||    
T  12273693 atggcaaaatactcttaagcccggtgcatt--gcacgcctcaatcaataatatcgataag-tttctattctctatttaattt 12273771  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 14802780 - 14802964
Alignment:
Q  18 ctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgt 117  Q
    |||| ||| |||||||||| |||| |  ||||||| |||||  ||||||||||| ||||||| ||||| | ||| ||||| ||||| |||| ||||  |     
T  14802780 ctgaaaccttgctaattcacgtgcagtgctagcaagaagtggttgttgtatcctggagagtattagctatcagatctatcgcatcgaataacttatttga 14802879  T
Q  118 ggtgacgaaata----ctcttaagctcggtactttgagcacgccttagtcaataatcgataagtttt-ctattctctatttaatt 197  Q
    |||| | |||||    ||||||| | | ||  |||| ||| |||| || |||||||||||||||||| |||||||||||||||||    
T  14802880 ggtggcaaaatatatactcttaaacccagtgttttgtgcatgcctcagccaataatcgataagtttttctattctctatttaatt 14802964  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 53837664 - 53837501
Alignment:
Q  16 ttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatcc 115  Q
    |||||||||| ||||||||||| |||||  |||||||||||||| |||||||||||  |||||| || || ||||| ||||| |||||||| ||| ||||    
T  53837664 ttctgagaccttgctaattcatatgcggtgctagcaaaaagtgattgttgtatcctgcagagtattaactatgagatctatcgcatcggatgattcatcc 53837565  T
Q  116 gtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttt 179  Q
    | |||| |||||||||||||||| |  |||||   |||||||| ||||||||||||||||||||    
T  53837564 gaggtggcgaaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagttt 53837501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 24734425 - 24734243
Alignment:
Q  16 ttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatcc 115  Q
    |||||||||| ||||||||||  |||||  |||| || | |||||||||||||||| ||||||| ||||| |||||||||   |||| |||||  ||||     
T  24734425 ttctgagaccttgctaattcacatgcggtgctagtaagatgtgactgttgtatcctggagagtattagctatgagacctactgcatcagataacctatct 24734326  T
Q  116 gtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttctattctctatttaattt 198  Q
    | |||| |||| |||||||||| ||||| ||| | |||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  24734325 ggggtggcgaagtactcttaagttcggtgcttcgtgcacacctcagtcaataattgataagttttctattctctatttaattt 24734243  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 53834064 - 53833903
Alignment:
Q  18 ctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgt 117  Q
    |||||||| ||||||||||  |||||  |||| || |||||| |||||||||||  |||||| ||||| ||||||||||| |||||| | |||||||||     
T  53834064 ctgagaccttgctaattcacatgcggtgctaggaagaagtgattgttgtatcctgcagagtattagctatgagacctatcgcatcgggttatttatccgg 53833965  T
Q  118 ggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttt 179  Q
    | || | |||||||||| ||| | || |||   |||||||| |  |||||||||||||||||    
T  53833964 gatggcaaaatactcttcagcccagtgcttcatgcacgcctcaaccaataatcgataagttt 53833903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 7909552 - 7909508
Alignment:
Q  151 gcacgccttagtcaataatcgataagttttctattctctatttaa 195  Q
    |||||||| ||||||||||| ||||||||||| ||||||| ||||    
T  7909552 gcacgcctcagtcaataatcaataagttttcttttctctacttaa 7909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17895613 - 17895752
Alignment:
Q  1 agcatccaaaaa--tggttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatca 98  Q
    ||||||||||||  || || ||||||| ||||| |||||||||||   |||||| |||||| ||||||||||| ||||||||||||||||||||| |  |    
T  17895613 agcatccaaaaagttgtttttgagaccttgctagttcatgtgcggtgttagcaagaagtgattgttgtatcctggagagtactagctgtgagaccaacta 17895712  T
Q  99 catcggataatttatccgtggtgacgaaatactcttaagc 138  Q
     | ||||||| | |||||||| | | ||||||||||||||    
T  17895713 taccggataactaatccgtggcggcaaaatactcttaagc 17895752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 33827499 - 33827655
Alignment:
Q  19 tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtg 118  Q
    ||||||| ||||||| || ||||||  ||||||| ||| || ||||||||||| ||||||| || || ||||||||||| |||| | | ||| ||||| |    
T  33827499 tgagaccttgctaatccacgtgcggtgctagcaagaagcgattgttgtatcctggagagtattatctatgagacctatcgcatcaggtgattcatccggg 33827598  T
Q  119 gtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataa 175  Q
    ||| | |||||||||||||| | || ||| | |||||||| ||||||| | ||||||    
T  33827599 gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaatgaccgataa 33827655  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 17895512 - 17895438
Alignment:
Q  16 ttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgag 90  Q
    |||||||||| || || |||||||||||   |||||| |||||||| |||||||||  |||||||||||||||||    
T  17895512 ttctgagaccttggtagttcatgtgcggtgttagcaataagtgactcttgtatcctaaagagtactagctgtgag 17895438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 11128959 - 11128885
Alignment:
Q  63 ttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtggtgacgaaatactcttaag 137  Q
    ||||||||| |||| |||||||| ||||||| | | |||||||| ||  |||||||||| | |||||||||||||    
T  11128959 ttgtatcctggagaatactagctatgagaccaaccgcatcggatgatccatccgtggtggcaaaatactcttaag 11128885  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 15051514 - 15051694
Alignment:
Q  16 ttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgaga-gtactagctgtgagacctatcacatcggataatttatc 114  Q
    |||||||||| ||||||| || ||||||  ||||||| ||| ||||||| ||| || |||| ||| ||||| ||||| ||||| |||||||||| |||||    
T  15051514 ttctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgtt-tattctggagaagtattagctatgagatctatcgcatcggataacttatc 15051612  T
Q  115 cgtggtgacgaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttctattctctatttaattt 198  Q
    || | || |||||||||||||| | |  | | ||  ||||| || |||||||||||||||||| || | |||||| ||||||||    
T  15051613 cgggatggcgaaatactcttaaacccaatgcatt--gcacgtctcagtcaataatcgataagtgttttgttctctttttaattt 15051694  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 24542662 - 24542780
Alignment:
Q  19 tgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtg 118  Q
    ||||||| |||||||||| ||||||  ||||||| |  ||| |||||||| || ||||||||||||| ||||| | | | |||||||| ||  ||||||     
T  24542662 tgagaccttgctaattcacgtgcggtgctagcaagatatgattgttgtattctggagagtactagctatgagatcaaccgcatcggatgatccatccgta 24542761  T
Q  119 gtgacgaaatactcttaag 137  Q
     || | |||||||||||||    
T  24542762 atggcaaaatactcttaag 24542780  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 4648348 - 4648176
Alignment:
Q  27 tgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatccgtggtgacgaa 126  Q
    ||||||||||||||| |   |||||| ||||||||||||||||||  |||||||||||| ||||||| |  ||||||| ||| ||||   ||||  ||||    
T  4648348 tgctaattcatgtgcagtgttagcaagaagtgactgttgtatcctgaagagtactagctatgagaccaacaacatcgggtaacttatatttggtagcgaa 4648249  T
Q  127 atactcttaagctcggtactttgagcacgccttagtcaata--atcgataagttttctattctctatttaattta 199  Q
    | ||||||||||||  | | ||| ||||||||||||  |||  ||| |||||||||| || ||||||||| ||||    
T  4648248 a-actcttaagctcaatgcattg-gcacgccttagttcataagatcaataagttttcaatactctatttatttta 4648176  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 38787072 - 38787191
Alignment:
Q  16 ttctgagaccctgctaattcatgtgcggcactagcaaaaagtgactgttgtatcctcgagagtactagctgtgagacctatcacatcggataatttatcc 115  Q
    |||||||||  || |||||||  |||||  ||||||| | |||||||||||||||| |||||||||| || |  ||||||   |||||||||||  ||||    
T  38787072 ttctgagactttgttaattcacatgcggtgctagcaagatgtgactgttgtatcctggagagtactaactat--gacctactgcatcggataatcaatcc 38787169  T
Q  116 gtggtgacgaaatactcttaag 137  Q
      ||||||||||||||||||||    
T  38787170 agggtgacgaaatactcttaag 38787191  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 54572967 - 54573036
Alignment:
Q  124 gaaatactcttaagctcggtactttgagcacgccttagtcaataatcgataagttttc-tattctctatt 192  Q
    ||||||||||||||  | || ||| | |||||||| |||||||||||||||||||| | |||||||||||    
T  54572967 gaaatactcttaagtccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttattctctatt 54573036  T

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