View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5000_high_2 (Length: 363)
Name: NF5000_high_2
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5000_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 31 - 342
Target Start/End: Original strand, 46777192 - 46777505
Alignment:
| Q |
31 |
cagagaagagtggaacatac---tgacaaaatcaaggaggtttttgaagtttcgcaaaatctaaaaagannnnnnnacgaaagttacaatttcaaggaag |
127 |
Q |
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| T |
46777192 |
cagagaagagtgcaacatacgtctgacaaaatcaaggaggtttttgaagtttcgcaaaatcgagaaagattttcc-acaaaagttacaatttcggagaag |
46777290 |
T |
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| Q |
128 |
agataattgacaattcactcaaagttcaatttcagaacagataattgacaattccgacaaaggatttgacgaatgttaaatcaaacctaagaactcatct |
227 |
Q |
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| T |
46777291 |
aaatgattgacaattcactcaaagttcaatttcagaagagataattgacaatttcgacaaaggatttgacgaatgttaaatcaaacctatgaactcatct |
46777390 |
T |
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| Q |
228 |
tatacatcaattgattctaaacgaagattaaccactcgactcgaattcactattgggccaaaacaaactagacgcttaacccacaattttgacaaaatcc |
327 |
Q |
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| T |
46777391 |
tatacatcaattgtttctcaaggaagattaaccactcgactctaattcactattgggccaaaacaaactagacgcttaacccacaattttgacaaaatcc |
46777490 |
T |
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| Q |
328 |
gagtttgtagtttat |
342 |
Q |
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| T |
46777491 |
gagtttgtagtttat |
46777505 |
T |
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