View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5000_low_14 (Length: 230)
Name: NF5000_low_14
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5000_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30411345 - 30411131
Alignment:
| Q |
1 |
agtttcggtgcaacaacccctttggtttctcctgcaactccatcaccatgtctcacaataccacctggaattagtcccaccgcattgcttgaatccccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30411345 |
agtttcggtgcaacaacccctttggtttctcctgcaactcgatcaccatgtctcacaataccacctgggattagtcccaccgcattgcttgaatccccca |
30411246 |
T |
|
| Q |
101 |
tcatgcttcccaattctcaggtataactatgatcacacatctcattttcattttttcaacattagactagtgaattaatcataattttcgtcattgaaat |
200 |
Q |
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|||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30411245 |
tcatgcttcctaattctcaggtatcactatgatcacaaatctcattttcatattttcaacattagactagtgaattaatcataattttcgtcattgaaat |
30411146 |
T |
|
| Q |
201 |
tgtatatgttggtta |
215 |
Q |
| |
|
||||||||||||||| |
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| T |
30411145 |
tgtatatgttggtta |
30411131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 30399024 - 30398822
Alignment:
| Q |
2 |
gtttcggtgcaacaacccctttggtttctcctgcaactccatcaccatgtctcacaataccacctggaattagtcccaccgcattgcttgaatcccccat |
101 |
Q |
| |
|
|||| |||||| |||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| | |
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| T |
30399024 |
gttttggtgcagcaacgtctttggtttctccagcaactcgatcaccatggctcacaataccacctgggattagtcccactgcattgcttgaatcccctgt |
30398925 |
T |
|
| Q |
102 |
catgcttcccaattctcaggtataactatgatcacacatctcattttcattttttcaacattagactagtgaattaatcataattttcgtcattgaaatt |
201 |
Q |
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|||||||| |||||||||||||| |||||||||||||| | ||||| |||| ||||| ||||||||||||||||||| | ||||| |||||||||||| |
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| T |
30398924 |
catgcttcttaattctcaggtatagctatgatcacacatgtaattttgatttattcaattttagactagtgaattaatcgtcatttttgtcattgaaatt |
30398825 |
T |
|
| Q |
202 |
gta |
204 |
Q |
| |
|
||| |
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|
| T |
30398824 |
gta |
30398822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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