View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5000_low_2 (Length: 480)

Name: NF5000_low_2
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5000_low_2
NF5000_low_2
[»] chr3 (7 HSPs)
chr3 (16-420)||(17276339-17276740)
chr3 (345-415)||(16000061-16000130)
chr3 (344-462)||(15796296-15796409)
chr3 (344-420)||(10268526-10268601)
chr3 (344-420)||(10335326-10335401)
chr3 (344-415)||(24205086-24205156)
chr3 (378-415)||(3610610-3610647)
[»] chr5 (10 HSPs)
chr5 (344-462)||(15382421-15382536)
chr5 (344-415)||(21522694-21522764)
chr5 (344-415)||(21533260-21533330)
chr5 (363-420)||(19552583-19552639)
chr5 (346-415)||(41995417-41995485)
chr5 (343-415)||(19579644-19579715)
chr5 (359-407)||(37328897-37328944)
chr5 (378-420)||(36642802-36642844)
chr5 (344-420)||(17177063-17177138)
chr5 (359-415)||(22013373-22013428)
[»] chr8 (5 HSPs)
chr8 (343-420)||(22651919-22651995)
chr8 (344-420)||(29510344-29510419)
chr8 (345-420)||(24857954-24858028)
chr8 (378-420)||(4673465-4673507)
chr8 (342-415)||(24362247-24362319)
[»] scaffold0652 (1 HSPs)
scaffold0652 (346-420)||(502-575)
[»] scaffold0027 (1 HSPs)
scaffold0027 (344-462)||(46626-46739)
[»] scaffold0053 (1 HSPs)
scaffold0053 (344-420)||(8742-8817)
[»] chr6 (7 HSPs)
chr6 (344-420)||(7938060-7938135)
chr6 (344-420)||(426554-426629)
chr6 (344-420)||(8777013-8777088)
chr6 (344-420)||(9107410-9107485)
chr6 (345-420)||(16766642-16766716)
chr6 (344-420)||(1681702-1681777)
chr6 (343-415)||(24115892-24115963)
[»] chr7 (3 HSPs)
chr7 (344-415)||(1433398-1433468)
chr7 (346-420)||(11061116-11061189)
chr7 (378-415)||(13770668-13770705)
[»] chr2 (2 HSPs)
chr2 (360-415)||(21624226-21624280)
chr2 (345-415)||(18276466-18276535)
[»] chr1 (4 HSPs)
chr1 (341-412)||(10577783-10577853)
chr1 (344-420)||(6612211-6612286)
chr1 (344-420)||(13011256-13011331)
chr1 (352-420)||(48040502-48040569)
[»] chr4 (2 HSPs)
chr4 (344-462)||(23292988-23293101)
chr4 (344-420)||(19482612-19482687)
[»] scaffold0007 (1 HSPs)
scaffold0007 (343-415)||(225313-225384)
[»] scaffold0136 (1 HSPs)
scaffold0136 (378-415)||(3894-3931)
[»] scaffold0021 (1 HSPs)
scaffold0021 (344-413)||(130426-130494)
[»] scaffold0171 (1 HSPs)
scaffold0171 (378-414)||(23397-23433)
[»] scaffold0116 (1 HSPs)
scaffold0116 (344-412)||(9842-9909)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 420
Target Start/End: Original strand, 17276339 - 17276740
Alignment:
Q  16 atgaaggaattatgtataagtattaagacggtgaattttt-cggtatggttcaacgagttttaacaattttgcaaattaattttgcagaggctagtccta 114  Q
    |||||| ||||||||| ||||||||||| | ||| ||||| || |||||||| || |||  |||||||||||||||||||||||||||||||||||||||    
T  17276339 atgaagaaattatgtaaaagtattaagaagatgatttttttcgctatggttcgacaagtgctaacaattttgcaaattaattttgcagaggctagtccta 17276438  T
Q  115 aacacattttgaatatgatgcaagtgaaggggttgagaatctcccatattaaaagtcatctccaggtacatatatatttgatccaacttcaattaattta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    ||  |||||||||||||    
T  17276439 aacacattttgaatatgatgcaagtgaaggggttgagaatctcccatattaaaagtcatctccaggtacatatacagtt----caggttcaattaattta 17276534  T
Q  215 atcctcattattaaaatatattcttgcttattttcttttaaaagtaaaacttagacctggatcttcttgtcttggtttaacatatttttgatagactatg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17276535 atcctcattattaaaatatattcttgcttattttcttttaaaagtaaaacttagacctggatcttcttgtcttggtttaacatatttttgatagactatg 17276634  T
Q  315 gtatcataacaactctttttcctaatatgctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataa 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  17276635 gtatcataacaactctttttcctaatatgctatgaagtacggaaacagacatggacaccgaatcacgatacagacactgatacgccgacacagctaataa 17276734  T
Q  415 tctgaa 420  Q
    ||||||    
T  17276735 tctgaa 17276740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 415
Target Start/End: Complemental strand, 16000130 - 16000061
Alignment:
Q  345 tatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||    
T  16000130 tatgaagcacggatacggacacggacaccgaa-cacgacacagacactgacacgccgacacaactaataat 16000061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 462
Target Start/End: Complemental strand, 15796409 - 15796296
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaaggnnnnnnncatataattcagta 443  Q
    |||||||| ||||| | |||||||||||||| | |||||||| |||| ||| |||||||||||||||||||| ||||         |||||||||||||     
T  15796409 ctatgaagcacggatatggacacggacaccgga-cacgacacggacaatgacacgccgacacagttaataatttgaa----aaaatcatataattcagtg 15796315  T
Q  444 taattacaaatgtcggtgt 462  Q
    ||||||||| |||||||||    
T  15796314 taattacaattgtcggtgt 15796296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 10268601 - 10268526
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| ||||| ||| ||||||||| ||| | ||||||  |||||||| |||||||||||||||||||| ||||    
T  10268601 ctatgaagcacggatacgaacacggacatcgatt-acgacatggacactgacacgccgacacagttaataatttgaa 10268526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 10335401 - 10335326
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| ||||| ||| |||||||||||| | |||||||| |||||||| |||||||||||  ||||||| ||||    
T  10335401 ctatgaagcacggatacgaacacggacaccgga-cacgacacggacactgacacgccgacacaactaataatttgaa 10335326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 415
Target Start/End: Complemental strand, 24205156 - 24205086
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    |||||||| ||||| || ||||||||||||| | |||||||| |||||||| |||||||||| | |||||||    
T  24205156 ctatgaagcacggacacagacacggacaccgga-cacgacacggacactgacacgccgacacggataataat 24205086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 3610610 - 3610647
Alignment:
Q  378 cacgacacagacactgatacgccgacacagttaataat 415  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  3610610 cacgacacagacactgacacgccaacacagttaataat 3610647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 462
Target Start/End: Original strand, 15382421 - 15382536
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaaggnnnnnnncatataattcagta 443  Q
    |||||||| ||||| |||||||||||||||| | |||||||| |||| ||| |||||||||||| ||||||| ||||         ||||||||||||||    
T  15382421 ctatgaagcacggatacggacacggacaccgga-cacgacacggacaatgacacgccgacacagctaataatttgaa--aaaaaatcatataattcagta 15382517  T
Q  444 taattacaaatgtcggtgt 462  Q
    ||||||||| |||||||||    
T  15382518 taattacaagtgtcggtgt 15382536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 21522694 - 21522764
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    |||||||| ||||| |||||||||| ||||| | |||||||| |||||||| |||||||||||| |||||||    
T  21522694 ctatgaagcacggatacggacacggtcaccgga-cacgacacggacactgacacgccgacacagctaataat 21522764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 21533260 - 21533330
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    |||||||| ||||| |||||||||| ||||| | |||||||| |||||||| |||||||||||| |||||||    
T  21533260 ctatgaagcacggatacggacacggtcaccgga-cacgacacggacactgacacgccgacacagctaataat 21533330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 19552639 - 19552583
Alignment:
Q  363 acacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||| ||||||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  19552639 acacggccaccgaa-cacgacacggacactgacacgccgacacagttaataatttgaa 19552583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 41995417 - 41995485
Alignment:
Q  346 atgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    |||||| ||||| |||||||||||||| | || |||||||||||||||| |||||||||||  |||||||    
T  41995417 atgaagcacggatacggacacggacactggat-acgacacagacactgacacgccgacacaactaataat 41995485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 415
Target Start/End: Original strand, 19579644 - 19579715
Alignment:
Q  343 gctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    ||||||||| ||||| ||| |||| ||||||| || || |||| ||||||||||||||||||||| |||||||    
T  19579644 gctatgaagcacggatacgtacaccgacaccggat-acaacacggacactgatacgccgacacagctaataat 19579715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 37328944 - 37328897
Alignment:
Q  359 acggacacggacaccgaatcacgacacagacactgatacgccgacacag 407  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  37328944 acggacacggacaccgaa-cacgacacggacactgatacaccgacacag 37328897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 36642844 - 36642802
Alignment:
Q  378 cacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| |||||||| |||||||||||||||||||| ||||    
T  36642844 cacgacacggacactgacacgccgacacagttaataatttgaa 36642802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 17177138 - 17177063
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| ||||| |||||||| ||||||  || ||||| | |||||||||||||| |||||| ||||||| ||||    
T  17177138 ctatgaagcacggatacggacacagacaccagat-acgactcggacactgatacgccaacacagctaataatttgaa 17177063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 22013373 - 22013428
Alignment:
Q  359 acggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    ||||| |||||||||| | |||||||| |||||||| |||||||||||| |||||||    
T  22013373 acggatacggacaccgga-cacgacacggacactgacacgccgacacagctaataat 22013428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 22651919 - 22651995
Alignment:
Q  343 gctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    ||||||||||||||| |||||||| ||||||| | |||||||| |||||||| |||||||||||| ||||||| ||||    
T  22651919 gctatgaagtacggatacggacactgacaccgga-cacgacacggacactgacacgccgacacagctaataatttgaa 22651995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 29510419 - 29510344
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| ||||| || |||| |||||||| | |||||||| |||||||| |||||||||||| ||||||| ||||    
T  29510419 ctatgaagcacggatactgacatggacaccgga-cacgacacggacactgacacgccgacacagctaataatttgaa 29510344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 420
Target Start/End: Original strand, 24857954 - 24858028
Alignment:
Q  345 tatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    ||||||| ||||| ||||||||| |||||| | |||||||| ||||  || |||||||||||||||||||| ||||    
T  24857954 tatgaagaacggatacggacacgaacaccgga-cacgacacggacatggacacgccgacacagttaataatttgaa 24858028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 4673507 - 4673465
Alignment:
Q  378 cacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||    
T  4673507 cacgacacagacactgacacgccgacacagataataatttgaa 4673465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 24362319 - 24362247
Alignment:
Q  342 tgctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    |||||||||| || || ||||| |||||||||| || ||||||||||||| || |||||||||| | |||||||    
T  24362319 tgctatgaagcacagatacggatacggacaccggat-acgacacagacaccgacacgccgacaccgctaataat 24362247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 420
Target Start/End: Complemental strand, 575 - 502
Alignment:
Q  346 atgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||| ||||| |||||||||||||||||| |||| ||| ||||||||||||||||||| | ||||||| ||||    
T  575 atgaagcacggatacggacacggacaccgaa-cacgccacggacactgatacgccgacactgctaataatttgaa 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 462
Target Start/End: Original strand, 46626 - 46739
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaaggnnnnnnncatataattcagta 443  Q
    |||||||| ||||| ||||||||||||| || | |||||||| |||| ||| |||||||||||||||||||| ||||         || ||||||||||     
T  46626 ctatgaagcacggatacggacacggacatcgga-cacgacacggacaatgacacgccgacacagttaataatttgaa----aaaatcacataattcagtg 46720  T
Q  444 taattacaaatgtcggtgt 462  Q
    |||||||||||||||||||    
T  46721 taattacaaatgtcggtgt 46739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 8742 - 8817
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| | ||| |||||||||||||||| | |||||||| |||||||| |||||||||||| ||||||| ||||    
T  8742 ctatgaagcatggatacggacacggacaccgga-cacgacacggacactgacacgccgacacagctaataatttgaa 8817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 7938060 - 7938135
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| ||||| |||||||||||||||| | |||||||  |||||||| |||||||||||| ||||||| ||||    
T  7938060 ctatgaagcacggatacggacacggacaccgga-cacgacatggacactgacacgccgacacagctaataatttgaa 7938135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 426629 - 426554
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| | ||| || |||||||| |||| | |||||||| |||||||| |||||||||||||||||||| ||||    
T  426629 ctatgaagcatggatacagacacggataccgga-cacgacacggacactgacacgccgacacagttaataatttgaa 426554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 8777088 - 8777013
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| ||||| ||||||||||||| || | |||||||| |||||||| |||||||||||  ||||||| ||||    
T  8777088 ctatgaagcacggatacggacacggacaacgga-cacgacacggacactgacacgccgacacaactaataatttgaa 8777013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 9107485 - 9107410
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| ||||| || ||||||||||||| | |||||||| |||||| | |||||||||||| ||||||| ||||    
T  9107485 ctatgaagcacggatactgacacggacaccgga-cacgacacggacactaacacgccgacacagctaataatttgaa 9107410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 420
Target Start/End: Original strand, 16766642 - 16766716
Alignment:
Q  345 tatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    ||||||| | ||| |||||||||||||||| | |||||||  |||||||| |||||||||||| ||||||| ||||    
T  16766642 tatgaagcatggatacggacacggacaccgga-cacgacatggacactgacacgccgacacagctaataatttgaa 16766716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 1681702 - 1681777
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| ||||| || ||||| ||||||||| ||||||||| ||||| | |||||||||||  ||||||| ||||    
T  1681702 ctatgaagcacggatacagacacagacaccgaa-cacgacacatacactaacacgccgacacaactaataatttgaa 1681777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 24115963 - 24115892
Alignment:
Q  343 gctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    ||||||||||||||| || ||||| ||||||||| ||||||| || |||||| |||| ||||||  |||||||    
T  24115963 gctatgaagtacggatacagacacagacaccgaa-cacgacataggcactgacacgctgacacaactaataat 24115892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 1433398 - 1433468
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    |||||||| ||||| |||| ||||||||||||| |||||||| |||| ||| |||||||||| |||||||||    
T  1433398 ctatgaagcacggatacgggcacggacaccgaa-cacgacacggacattgacacgccgacaccgttaataat 1433468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 420
Target Start/End: Complemental strand, 11061189 - 11061116
Alignment:
Q  346 atgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||| ||||| ||||||||||||| || || ||||||| |||||||| || ||||||||| ||||||| ||||    
T  11061189 atgaagcacggatacggacacggacatcggat-acgacacggacactgacacaccgacacagctaataatttgaa 11061116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 13770668 - 13770705
Alignment:
Q  378 cacgacacagacactgatacgccgacacagttaataat 415  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  13770668 cacgacacggacactgatacgccgacacagctaataat 13770705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 21624226 - 21624280
Alignment:
Q  360 cggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  21624226 cggatacggacaccgaa-cacgacacagacactgacacgccgacacagctaataat 21624280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 415
Target Start/End: Original strand, 18276466 - 18276535
Alignment:
Q  345 tatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    ||||||| ||||| || ||||||||||||| | ||||| ||||||||||||| |||||||| | |||||||    
T  18276466 tatgaagcacggatacagacacggacaccgga-cacgatacagacactgatatgccgacaccgctaataat 18276535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 412
Target Start/End: Complemental strand, 10577853 - 10577783
Alignment:
Q  341 atgctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaat 412  Q
    ||||||||||| ||||| |||||||||||||||| | |||||||| ||||| || |||||||||||| ||||    
T  10577853 atgctatgaagcacggatacggacacggacaccgga-cacgacacggacaccgacacgccgacacagctaat 10577783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 6612286 - 6612211
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| || || ||||||||| |||||| | |||||||| |||| ||| ||||||| |||||||||||| ||||    
T  6612286 ctatgaagcacagatacggacacgaacaccgga-cacgacacggacaatgacacgccgatacagttaataatttgaa 6612211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 13011331 - 13011256
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| || || || ||||||||||||||| ||||||||  ||||||| | |||||||||| ||||||| ||||    
T  13011331 ctatgaagaacagatacagacacggacaccgaa-cacgacacgaacactgacatgccgacacagctaataatttgaa 13011256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 48040569 - 48040502
Alignment:
Q  352 tacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||| | ||| |||||||||| | |||||||| |||||||| |||||||||||| ||||||| ||||    
T  48040569 tacggatatggatacggacaccgga-cacgacacggacactgacacgccgacacagataataatttgaa 48040502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 462
Target Start/End: Complemental strand, 23293101 - 23292988
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaaggnnnnnnncatataattcagta 443  Q
    |||||||| || || |||||||||||||||| | |||||||| |||| ||| |||||||||||| ||||||| ||||         || |||||||||||    
T  23293101 ctatgaagcacagatacggacacggacaccgga-cacgacacggacaatgacacgccgacacagctaataatttgaa----aaaatcacataattcagta 23293007  T
Q  444 taattacaaatgtcggtgt 462  Q
    ||||||||| |||||||||    
T  23293006 taattacaagtgtcggtgt 23292988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 19482612 - 19482687
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataatctgaa 420  Q
    |||||||| ||||| ||| |||| ||||||  | ||||||||||||||||| |||||||||||  ||||||| ||||    
T  19482612 ctatgaagcacggatacgaacacagacaccaga-cacgacacagacactgacacgccgacacaactaataatttgaa 19482687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 225384 - 225313
Alignment:
Q  343 gctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaataat 415  Q
    ||||||||  ||||| || ||||||||||||| | |||||||| |||||||| |||||||||||| |||||||    
T  225384 gctatgaaacacggacacagacacggacaccgga-cacgacacggacactgacacgccgacacagataataat 225313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 3931 - 3894
Alignment:
Q  378 cacgacacagacactgatacgccgacacagttaataat 415  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  3931 cacgacacagacactgatatgccgacacggttaataat 3894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 130426 - 130494
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaata 413  Q
    |||||||| | ||| |||||||||||||||| | |||||||| |||| ||| | ||||||||||||||||    
T  130426 ctatgaagcatggatacggacacggacaccgga-cacgacacggacaatgacaagccgacacagttaata 130494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 23397 - 23433
Alignment:
Q  378 cacgacacagacactgatacgccgacacagttaataa 414  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  23397 cacgacacagacactgacacgccgacacagataataa 23433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 9842 - 9909
Alignment:
Q  344 ctatgaagtacggaaacggacacggacaccgaatcacgacacagacactgatacgccgacacagttaat 412  Q
    |||||||| ||||| |||||||||||||||| | |||||||  ||||| || |||||||||||| ||||    
T  9842 ctatgaagcacggatacggacacggacaccgga-cacgacatggacaccgacacgccgacacagctaat 9909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University