View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5000_low_3 (Length: 380)
Name: NF5000_low_3
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5000_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 36243961 - 36244244
Alignment:
| Q |
1 |
catcaatttcacagtaatcatcaaatagaaagttctgcaatttcttcaatggagaaaattcatgaacccatattctgcaatttttt-cacagtaatcatn |
99 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36243961 |
catcaatttcacagtaatcatcaaatagaaagttttgcaatttcttcaatggagaaaattcatgaacccatattctgcaatttttttcacagtaatcata |
36244060 |
T |
|
| Q |
100 |
nnnnnnnnnnnnnnncactcacccacattcatgaacccatactcaatcattgtcttttgtttcttcatgaatcttgtttctggtttcacagtttctgaga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36244061 |
aaacaaaataaaaaacactcacccacattcatgaacccatactcaatcattgtcttttgtttcttcatgaatcttgtttctggtttcacagtttctgaga |
36244160 |
T |
|
| Q |
200 |
atttgtggaactcaaaattga--nnnnnnnnagatctgagattgagggtattattattgtgaagtgattaatttgaagttgtgg |
281 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36244161 |
atttgtggaactcaaaattgattttttttttagatctgagattgagggtattattattgtgaagtgattaatttgaagttgtgg |
36244244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 28050773 - 28051060
Alignment:
| Q |
1 |
catcaatttcacagtaatcatcaaatagaaagttctgcaatttcttcaatggagaaaattcatgaacccatattctgcaattttttcacagtaatcatnn |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28050773 |
catcaatttcaaagtaatcatcaaatagaaagttctgcaatttcttcaatggagaaaattcatgaacccatattccgcaattttttcacagtaatcataa |
28050872 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnncactcacccacattcatgaacccatactcaatcattgtcttttgtttcttcatgaatcttgtttctggtttcacagtttctgagaa |
200 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28050873 |
aacaaaataacaaacactcacccacattcatgaactcatactcaatcaatgtcttttgtttcttcatgaatcttgtttctggtttcatagtttctgagaa |
28050972 |
T |
|
| Q |
201 |
tttgtggaactcaaaattga-------nnnnnnnnagatctgagattgagggtattattattgtgaagtgattaatttgaagttgtgg |
281 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28050973 |
tttgtggaactcaaaattgattttttttttttttaagatctgagattgagggtattattattgtgaagtgattaatttgaagttgtgg |
28051060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 9803099 - 9803177
Alignment:
| Q |
142 |
tcaatcattgtcttttgtttcttcatgaatcttgtttctggtttcacagtttctgagaatttgtggaactcaaaattga |
220 |
Q |
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|||||||||||| |||||||||||||||||||| || |||||||| |||||||||| ||| |||||||||||||||| |
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| T |
9803099 |
tcaatcattgtcctttgtttcttcatgaatcttagttttggtttcattgtttctgagagtttttggaactcaaaattga |
9803177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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