View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5000_low_5 (Length: 351)
Name: NF5000_low_5
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5000_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 31036843 - 31037156
Alignment:
| Q |
19 |
aatgcgctggatggcaaaggcgttggcgtttggtctaatggagggccgatggccagtgaatggaaaagatcgtatacagagaaggttgcatcgtgtaaaa |
118 |
Q |
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| T |
31036843 |
aatgcgctggatggcaaaggcgttggcgtatggtctaatggagggccgagggccagtgaatggaaaaaatcgtatacagagaaggttgtatcgtgtaaaa |
31036942 |
T |
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| Q |
119 |
gtatatagagaagctgatacaaagttggattatttgacattaaggtttggtcaagtttcttaaagcttgtgtggtaccttagttgaaaacatagtatatt |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036943 |
gtatatagagaagctgagacaaagttggattatttgacattaaggtttggtcaagtttcttaaagcttgtgtggtaccttagttgaaaacatagtatatt |
31037042 |
T |
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| Q |
219 |
acaggtacattctcattctgatgtagtttgtagacgaaggaaaaggtactattcctttttgaacattctctctcagctctattttcttccttcttaaaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31037043 |
acaggtacattctcattctgatgtagtttgtagacgaaggaaaaggtactattcctttttgaacattctctctcagctctattttcttccttcttaaaga |
31037142 |
T |
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| Q |
319 |
taacaatacttgac |
332 |
Q |
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|||||||||||||| |
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| T |
31037143 |
taacaatacttgac |
31037156 |
T |
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