View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5000_low_6 (Length: 344)
Name: NF5000_low_6
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5000_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 52238587 - 52238897
Alignment:
| Q |
14 |
gagatgaatgtttatgaccaatttcaagcaagattctagaaattgcctatgaaagagacaaactttttgtaatgctaataaattgacccaaacatagtac |
113 |
Q |
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| T |
52238587 |
gagatgaatgtttatgaccaatttcaagcaagattctagaaattgcctatgaaagagaca--ctttttgtaatgctaataaattgacccaaacatagtac |
52238684 |
T |
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| Q |
114 |
ctgtaaaatatcaaaaactttttctgcagtgtacttttggtctgaagtagcacccttttgctgcaacttatctggatgcagactgagtaaagctctttga |
213 |
Q |
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| T |
52238685 |
ctgcaaaatatcaaaaactttttctgcagtgtacttttggtctgaagtagcacccttttgctgcaacttatccggatgcagactgagtaaagctctttga |
52238784 |
T |
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| Q |
214 |
taagatcttttaaccgcattcccttcaattatatcaacaagaggcacaggcttccagccacagtttggccaaagtacctttattcatgatggaagccatt |
313 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52238785 |
taagatcttttaaccgcgttcccttcaattatatcaacaagaggcacaggcttccagccacagtttggccaaagtacctttattcatgatggaagccatt |
52238884 |
T |
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| Q |
314 |
ttagaacaatttt |
326 |
Q |
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||||||||||||| |
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| T |
52238885 |
ttagaacaatttt |
52238897 |
T |
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