View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5000_low_7 (Length: 306)
Name: NF5000_low_7
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5000_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 1368759 - 1369033
Alignment:
| Q |
15 |
cagagacattatatgaatgtgctattgtgaccgatccaagagatgaaaatt-gaggtacattggtgatggctggtttgagtatattacctcaaagaaatt |
113 |
Q |
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| T |
1368759 |
cagagacattatatgaatgtgctattgtgaccgatccaagagatgaaaatttgaggtacattggtgatggttggtttgagtatattgcctcaaagaaatt |
1368858 |
T |
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| Q |
114 |
tgcagttggatctagtttaatatttatttatacgattgaatcacgcatgttgtatgtaacacttattgaacgtacgtagagatagttagcaatatattgt |
213 |
Q |
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| T |
1368859 |
tgcagttggatctagtttaatatttatttatacgattgaatcacgcatgttgtatgtgacgcttattgaacgtacgtagagatagttagcaatatattgt |
1368958 |
T |
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| Q |
214 |
aagaataaaggtacaatgcgaaactaaactaataaagctgtatttctatccttaatgtaatgttaaatccttctt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |
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| T |
1368959 |
aagaataaaggtacaatgcgaaactaaactaataaagttgtattcctatccttaatgtaatgttaaatctttctt |
1369033 |
T |
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