View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5000_low_8 (Length: 291)
Name: NF5000_low_8
Description: NF5000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5000_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 142 - 275
Target Start/End: Original strand, 41413923 - 41414056
Alignment:
| Q |
142 |
ttacagctccaatcttcaaaaaaccatcaacagtgaggttaagaagtggattgcccatgtcaatgaccacatcgaccttgggagaagacactgatcctga |
241 |
Q |
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| T |
41413923 |
ttacagctccaatcttcaaaaaaccatcaacagtgaggttaagaagtggattgcccatgtcaatgaccacatcgaccttgggagaagacactgatcctga |
41414022 |
T |
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| Q |
242 |
aatgctgctatgaggcatttttcacactcacact |
275 |
Q |
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| T |
41414023 |
aatgctgctatgaggcatttttcacactcacact |
41414056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 41413792 - 41413842
Alignment:
| Q |
7 |
tcgaagaatatgataggtatcctctgcaagtgcccttgtggctgcaacctg |
57 |
Q |
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| T |
41413792 |
tcgaacaatatgataggtatcctctgcaagtgcccttgtggctgcaacctg |
41413842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 272
Target Start/End: Original strand, 41421174 - 41421304
Alignment:
| Q |
142 |
ttacagctccaatcttcaaaaaaccatcaacagtgaggttaagaagtggattgcccatgtcaatgaccacatcgaccttgggagaagacactgatcctga |
241 |
Q |
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| T |
41421174 |
ttacagttccaatcttcaagaaaccatcaacagctagattaaggaaaggatttcccatgtctatgacaacatccacctgtggagaagacactgaaccgga |
41421273 |
T |
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| Q |
242 |
aatgctgctatgaggcatttttcacactcac |
272 |
Q |
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| T |
41421274 |
aattctgctccaaggcatctttcaaactcac |
41421304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 41421052 - 41421102
Alignment:
| Q |
7 |
tcgaagaatatgataggtatcctctgcaagtgcccttgtggctgcaacctg |
57 |
Q |
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| T |
41421052 |
tcgaacaatatgaaaggtatcttctgcaagtgcccttgtagctgcaacctg |
41421102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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