View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5001-Insertion-1 (Length: 1016)
Name: NF5001-Insertion-1
Description: NF5001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5001-Insertion-1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 908; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 908; E-Value: 0
Query Start/End: Original strand, 8 - 970
Target Start/End: Complemental strand, 38486804 - 38485837
Alignment:
| Q |
8 |
gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486804 |
gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctc |
38486705 |
T |
|
| Q |
108 |
gcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486704 |
gcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttc |
38486605 |
T |
|
| Q |
208 |
aaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgtt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
38486604 |
aaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacataaaccaagcaagagaagaaacgaaacctgtaaatatatgtt |
38486505 |
T |
|
| Q |
308 |
ccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486504 |
ccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctg |
38486405 |
T |
|
| Q |
408 |
gttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486404 |
gttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaat |
38486305 |
T |
|
| Q |
508 |
tttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacct |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486304 |
tttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacct |
38486205 |
T |
|
| Q |
608 |
tatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctg |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486204 |
catcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctg |
38486105 |
T |
|
| Q |
708 |
acaagcaatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttgc |
807 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486104 |
acaagcgatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttgc |
38486005 |
T |
|
| Q |
808 |
gagttgataccgtctggaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctag-aaagcc-aaagct |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
38486004 |
gagttgataccgtctggaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagct |
38485905 |
T |
|
| Q |
906 |
tgagggccttatagtggtacatcattcctct-acagt-cgcgatagtgtctgg-ctctataggatgcc |
970 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
38485904 |
tgagggccttatagtagtacatcattcctctaacagtccgcgatagtgtctggcctctataggatgcc |
38485837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 8 - 507
Target Start/End: Complemental strand, 3686035 - 3685536
Alignment:
| Q |
8 |
gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctc |
107 |
Q |
| |
|
||||||| |||||||| |||||||| || || || || |||||||||||||| | ||| || || || | ||||| || ||||| |||||||| || || |
|
|
| T |
3686035 |
gattcaagccaacatctcttcctttacctacctgtatatattcatgatgtgtcacattgccacctcgcaatgtacaattgaaaccagcaaaaatatcttc |
3685936 |
T |
|
| Q |
108 |
gcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttc |
207 |
Q |
| |
|
|| || |||||||||||||| || || |||| ||||| ||| | |||||||| |||||||||||||| ||||| || || ||||| || | |||| |
|
|
| T |
3685935 |
actaatattgatcactctagatgccttgctgactccacccctacacaagaaccaaaatctgtcaaacacatccggatgaccgtagtgcatccgtactttc |
3685836 |
T |
|
| Q |
208 |
aaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgtt |
307 |
Q |
| |
|
||||||||||||| || | ||| || | || |||||||||| || || | |||||||||||||||||| || ||||| | ||||| ||||||| | |
|
|
| T |
3685835 |
aaagggtttgccagaaatcgctggcccagtgtcacaaaacttgtctcttgggatgacatgaaccaagcaagcgacgaaacagagcctgtgaatatattct |
3685736 |
T |
|
| Q |
308 |
ccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctg |
407 |
Q |
| |
|
| | || |||||||| ||||| || ||||||| ||| ||||| || ||||| ||||| || | ||| || || |||||||| || ||||| || |
|
|
| T |
3685735 |
cacgaacccccaaaatggttggcttcttgataccatggtagacattgaactcctccaacagattccgcattttgagagcttcctcaaaataattgtcttg |
3685636 |
T |
|
| Q |
408 |
gttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaat |
507 |
Q |
| |
|
|||||||| || || ||||||||||| || || || || || || || || || ||||||||||| || |||||||||||||| || ||||| |||||| |
|
|
| T |
3685635 |
attcatatctatggtctgaattgcatcaccccgcgtaaagatcattgcatgattctgattttccggtttcccttctccaagttttaaaggaccaggcaat |
3685536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 782
Target Start/End: Complemental strand, 30121195 - 30120432
Alignment:
| Q |
16 |
ccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgt |
115 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| || |||| |||||||||||||| |||||| || || || ||||| |||||||||||||||| |
|
|
| T |
30121195 |
ccaacatcccttccctttccaacctgaatgtattcatggtgagtgacattacctccacgaagagtacaattgaacccagcaaatatgtcctcgcttatgt |
30121096 |
T |
|
| Q |
116 |
tgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtt |
215 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| || |
|
|
| T |
30121095 |
tgatcactctggaagctttgctgataccacctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatgcattcgaactttcaaaggatt |
30120996 |
T |
|
| Q |
216 |
tgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcact |
315 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||| ||||| |||||||||||||| ||||||||||| ||| | || || || || |||||||| || |
|
|
| T |
30120995 |
tgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgacatgaaccaggcaagagaggacacggagccagtgaaaatgtgttccctgaca |
30120896 |
T |
|
| Q |
316 |
cccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatat |
415 |
Q |
| |
|
|| ||||| |||||||| || | ||| |||||| | | | ||||| | |||||||| | || ||||| |||||||||||||| ||||| ||||| | |
|
|
| T |
30120895 |
cctaaaattgttggtttccggacaccgtagtaacgtctatactcttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcatgt |
30120796 |
T |
|
| Q |
416 |
caatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaattttacacg |
515 |
Q |
| |
|
| ||||| || | || |||||||||||||| ||||||||||| |||||||| || |||||||| || || || ||||| ||||| |||| ||| || | |
|
|
| T |
30120795 |
ctatagtctgcaaagcgtccccgcgagtgaagatgatggcgtgattttgattctcgggctttccctccccgagcttcaatggacccggcagtttgactct |
30120696 |
T |
|
| Q |
516 |
gtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaaccttatcaaca |
615 |
Q |
| |
|
||||| ||| |||||| | |||| ||| || |||||||||||||| ||||| |||| ||| ||| | ||||| || || || ||| ||| |
|
|
| T |
30120695 |
gtatacttcaacctccttttccaactgctgatcatacttaacaaggacagagaaata------ctccttcccgtcccttccagtagttctctcatccaca |
30120602 |
T |
|
| Q |
616 |
taggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctgacaagcaa |
715 |
Q |
| |
|
|| ||||||| || ||||||||||||||||||| |||||||||||| || ||||| |||||||| || |||| ||||||||||| ||||||||||||| |
|
|
| T |
30120601 |
tatgcaactcgaagagcttcattgtttttcattagatacaaaatttcctcagcatggggatccttcttttccttctgagttccataaatctgacaagcaa |
30120502 |
T |
|
| Q |
716 |
tcacatatgtgaatttcattaatgcagttccatagtcatggccttt---gaacaaacttactgtactgct |
782 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| || |||||||| ||||||||||||| |||||| |
|
|
| T |
30120501 |
ccacatatgtgaatttcatcaaagcagtcccatactcgtggcctttaaataacaaacttactgaactgct |
30120432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 404 - 488
Target Start/End: Complemental strand, 34191701 - 34191617
Alignment:
| Q |
404 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
488 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || || |||||||| || || || ||||| || || ||||||||||| ||||| |
|
|
| T |
34191701 |
cctgattcatatcaatagtttgaagtgcatcaccacgggtgaatattatcgcatgattttggttctcaggctttccttcaccaag |
34191617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 43955843 - 43955900
Alignment:
| Q |
8 |
gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatatt |
65 |
Q |
| |
|
|||||| ||||||||| || || ||||||||||| |||||||||||||| || ||||| |
|
|
| T |
43955843 |
gattcatcccaacatctctaccctttccaacttggatgtattcatgatgagtaatatt |
43955900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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