View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5001_high_2 (Length: 383)
Name: NF5001_high_2
Description: NF5001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5001_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 3425313 - 3425688
Alignment:
| Q |
1 |
ttgtgatttgatgtctgctattgcaattttagggaaaaattctcaaaaatcctgttaccgtatctttgagtttgagttctgtcattgttgccttgtattg |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425313 |
ttgtgatttgatatctgctattgcaattttagggaaaaattctcaaaaatcctgttaccgtatctttgagtttgagttctgtcattgttgccttgtattg |
3425412 |
T |
|
| Q |
101 |
accatgaaaataaggaagttagtgtcattcacagagataacttgtgtagcaagttatcttgttagttatccataattaactgtcatagctagaatcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425413 |
accatgaaaataaggaagttagtgtcattcacagagataacttgtgtagcaagttatcttgttagttatccataattaactgtcatagctagaatcttgt |
3425512 |
T |
|
| Q |
201 |
atagcgtatctacaatagctatcatacacactcttgtgccctataagacaaatatggtatgacttatgagagcctggttatgtcatcattgttctccatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425513 |
atagcgtatctacaatagctatcatacacactcttgtgtcctataagacaaatatggtatgacttatgagagcctggttatgtcatcattgttctccatc |
3425612 |
T |
|
| Q |
301 |
cttgctctatttctgtgcaaaagtttgcactgtccatcctttctatttctgctcgagttcttttctggttcatttc |
376 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
3425613 |
cttgctctatttctgtgcaaaagtttgcactgtccatcctttctatttctgctcgagttcttttttggttcgtttc |
3425688 |
T |
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