View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5001_high_4 (Length: 287)
Name: NF5001_high_4
Description: NF5001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5001_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 277
Target Start/End: Original strand, 48357933 - 48358173
Alignment:
| Q |
30 |
gtatcatcatcatattgatcatgagcaattcttgttataatttcttggctataaaactagaagaaagtcttactctttttaattgtaacatttttcttta |
129 |
Q |
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| T |
48357933 |
gtatcatcatcatattgatcatgagcaat-------ataatttcttggctataaaactagaagaaagtcttactctttttaattgtaacatttttattta |
48358025 |
T |
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| Q |
130 |
tgaatacgttgttagattgctatggaagtggtagagggtaagctgcggcctacacttccgtcaagggatgatggtgagcatttgggagaattgattgacc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48358026 |
tgaatacgttgttagattgctatggaagtggtagagggtaagctgcggcctacacttccgtcaagggatgatggtgagcatttgggagaattgattgacc |
48358125 |
T |
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| Q |
230 |
ttatacgcctttgttgggatggaactccatccactagaccatcctttg |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48358126 |
ttatacgcctttgttgggatggaactccatccactagaccatcctttg |
48358173 |
T |
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